Solvent accessibility
Prediction of protein solvent accessibility using PSO-SVR with multiple sequence-derived features and weighted sliding window scheme
... of solvent accessibility has been extensively investigated as it is related to the spatial ar- rangement and packing of amino acids during the process of protein folding ...certain solvent, ...
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Assessing the Impact of Secondary Structure and Solvent Accessibility on Protein Evolution
... of solvent accessibility classes distinguished sented here provides a statistical basis for a protein secondary is acc, and the total number of states in the HMM is hmm, structure prediction technique that ...
14
Accurate prediction of protein relative solvent accessibility using a balanced model
... Methods: Here, we propose a more accurate and balanced predictor of protein relative solvent accessibility. First, we collected known proteins in three subsets according to sequence length and constructed a ...
14
Density functional theory (DFT) and topological parameters based QSAR study of MK 886 analogues as bioactive mPGES 1 inhibitors
... In the above regression equations, r 2 is correlation coefficient, rCV 2 is cross-validation coefficient, Std. Error is standard error, SEE is standard error of estimate, DOF is degrees of freedom and N is data points ...
7
Topological Descriptor Based QSAR Study of Benzamidine as Inhibitor of Thrombin
... QSAR models of 22 benzamidine derivatives reported as inhibitors of thrombin have been developed using the descriptors heat of formation, valence connectivity index, shape index, solvent accessibility ...
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Identification and characterization of pigmented photoreceptor-producing microorganisms using FTIR spectroscopy
... temperature, solvent accessibility, pKa and neighboring amino acids ...the solvent; therefore, solvent accessibility causes conformational change of protein ...the solvent used ...
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ATPsite: sequence-based prediction of ATP-binding residues
... tive solvent accessibility (RSA), and dihedral angles, are encoded into a set of custom-designed features that are shown to improve the quality of the ATP-binding ...
8
Qsar Study of Testosterone Derivatives Using Quantum Chemical and Topological Descriptors
... Heat of formation, shape index order 1, valence connectivity index order 0 and solvent accessibility surface area are the best combination of descriptors to provide best QSAR model. The descriptor valence ...
7
Structural Characterization of Protein Folding Intermediates by Oxidative Labeling and Mass Spectrometry
... the solvent accessibility of individual residues, reflecting the degree of side chain packing and ...the solvent accessibility of individual foldons can be gained from m-values measured by ...
215
Using hydroxyl radical footprinting to explore the free energy landscape of protein folding.
... the solvent accessibility of amino acid side-chains concurrent with the folding process, by quantifying the degree of oxidation experienced by the wild-type protein relative to a kinetically trapped, ...
7
Productivity in Wales: analysis of the impacts of peripherality on spatial patterns of productivity
... 4.1-4.5 together. First, almost without exception, the different combinations of peripherality and accessibility are consistently statistically significant in driving labour productivity rates. The only exception ...
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Sampling Systems pdf
... This term denotes direct transfer of liquid sample into the column inlet, i.e. the sample is introduced to the column as a liquid rather than being evaporated from the syringe. Because the technique exploits ...
9
The availability of water associated with glycogen during dehydration; a reservoir or raindrop?
... sample including that associated with the glycogen. Shown in Table 3 are the predicted osmolalities assuming limited accessibility (i.e., glycogen has protected water) and it can be seen that actual measured ...
9
Who uses firearms as a means of suicide? A population study exploring firearm accessibility and method choice
... other studies [42]. Additionally, this research found that the risk of suicide by any means was more than doubled in those with a licence history (OR = 2.09, P < 0.001). A number of other studies have explored the ...
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Evaluating Bus System as Transportation Mode in Gaza Strip – Palestine Using GIS
... Analysis of Bus Stops Using GIS: Using the results of questionnaire, a general assessment for bus stops in Gaza Strip is introduced. Fourteen evaluation criteria were passed on three experts to give them weights, and ...
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Practice of walking and its association with perceived environment among elderly Brazilians living in a region of low socioeconomic level
... the accessibility of leisure structures such as soccer fields and public squares and the accessibility of health service structures such as pri- mary healthcare units were the environmental variables that ...
7
Environmental correlates of physical activity in multiple sclerosis: A cross-sectional study
... stores, accessibility of public transportation within a 10–15 minute walk from one's home, and presence of free or low-cost recreation facilities were all associated with the objective, but not self-report, ...
7
A GIS Based Multicriteria Decision Analysis Approach for Mapping Accessibility Patterns of Housing Development Sites: A Case Study in Canmore, Alberta
... procedures for mapping accessibility patterns of potential housing development sites in Canmore, Alberta. The method provides a mechanism to generate a wide range of decision strategies or evaluation scenarios by ...
12
The methylome of the marbled crayfish links gene body methylation to stable expression of poorly accessible genes
... In further analyses, we also explored the relation- ship between gene body methylation, chromatin acces- sibility and gene expression variability. Consistent with earlier observations in other organisms [25, 26, 35], we ...
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The QHS Criteria for Excellenc
... Opening and reception physical accessibility & appearance Telephone accessibility Information and documentation Dealing with people seeking housing Maintenance Rent payment and collectio[r] ...
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