tandem repeat(s)
A paternity case based on short tandem repeat (str) using dna finger printing technology
... The paternity testing was based on matches of the alleles at the 6 STR loci between the child, the mother and the alleged father (trio cases). To determine the paternity of the child, the allele inheritance was analyzed. ...
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Development of Candida auris Short Tandem Repeat Typing and Its Application to a Global Collection of Isolates
... Besides its elevated pathogenicity and multidrug resistance, C. auris is also highly transmissible. It colonizes the nose, axilla, and groin and is frequently found on inanimate surfaces and reusable equipment in health ...
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Extensive Allelic Variation among Francisella tularensis Strains in a Short Sequence Tandem Repeat Region
... Members of the genus Francisella and the species F. tularensis appear to be genetically very similar despite pronounced differences in virulence and geographic localization, and currently used typing methods do not allow ...
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Multiple Locus Variable Number Tandem Repeat Analysis of Neisseria gonorrhoeae
... variable-number tandem repeat (VNTR) sequences were amplified in a GeneAmp PCR system, model 9700 (Applied ...20 s at 95°C, 30 s at 50°C, and 60 s at 72°C, and a final step of 30 min at ...
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Nested tandem repeat computation and analysis : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Computational Biology at Massey University
... nested tandem repeat (NTR) in a string T is a complex repetitive structure consisting of many approximate copies of two substrings x and X (‘‘motifs’’) interspersed with one ...
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Multilocus Variable Number Tandem Repeat Typing of Mycobacterium ulcerans
... complexes, it is likely that they can be used for the typing of other species of the mycobacterial genus as well. This method offers several practical advantages over AFLP- or RFLP-based typing methods, such as easier ...
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Characterization of a Tandem Repeat Polymorphism in Legionella pneumophila and Its Use for Genotyping
... We have characterized several polymorphic minisatellites in L. pneumophila which can be used for genotyping. Three of these PCR markers have been able to amplify the DNA of the strains from all samples tested, although ...
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Tandem genotypes: robust detection of tandem repeat expansions from long DNA reads
... CUG repeat expansion in the 3’UTR of the transcript from the DMPK gene, producing a toxic gain-of-function transcript which sequesters splicing fac- tor proteins and causes aberrant splicing, resulting in multiple ...
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Tandem repeat copy number variation in protein coding regions of human genes
... the Tandem Repeats Finder (TRF) program version ...2-nucleotide repeat as an ...of repeat variation in all repeats, regard- less of their mutational ...variant tandem repeats need to consider ...
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The Conserved PFT1 Tandem Repeat Is Crucial for Proper Flowering in Arabidopsis thaliana
... ABSTRACT It is widely appreciated that short tandem repeat (STR) variation underlies substantial phenotypic variation in organisms. Some propose that the high mutation rates of STRs in functional genomic ...
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Molecular Typing of Mycobacterium abscessus Based on Tandem Repeat Polymorphism
... MLSA was done for 34 isolates as 4 isolates could not be re- trieved after storage. Seventeen different allelic profiles or sequence types (STs) were identified from the data deposited in the Institute Pasteur ...
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Development of a polymorphic short tandem repeat locus multiplex system for efficient human identification.
... short tandem repeat (STR) multiplex systems with simultaneous amplification has ensured facilities for human identification with an excellent power of discrimination, low consumption of biological samples ...
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Development and validation of a multiple locus variable number tandem repeat analysis (MLVA) scheme for Fusobacterium necrophorum
... number tandem repeat analysis (MLVA) as a strain typing technique for ...Seventy-three tandem repeat regions were identi fi ed in the ...
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Characterization of Human Cytomegalovirus Strains by Analysis of Short Tandem Repeat Polymorphisms
... short tandem repeat (STR) length polymor- phisms have been identified in the HCMV ...short tandem repeats also detected polymorphisms that supported simulta- neous excretion of two HCMV ...
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Context dependent energetics of loop extensions in a family of tandem repeat proteins
... The tandem repeat arrays of two repeats was constructed by the concate- merization of two individual CTPRa motifs using BamHI and BglII sites (31). Briefly, a single CTPR (CTPRa1) was purchased as a ...
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Original Article The functional TERT MNS16A polymorphic tandem repeat minisatellite contributes to gliomas development
... The TERT gene encodes the catalytic subunit of telomerase complex and plays a critical role in protecting the ends of the chromosome which are truncated during cell division [35]. The cancer-specific expression of TERT ...
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Comparison of a Variable Number Tandem Repeat (VNTR) Method for Typing Mycobacterium avium with Mycobacterial Interspersed Repetitive Unit VNTR and IS1245 Restriction Fragment Length Polymorphism Typing
... variable-number tandem-repeat (VNTR) typing method using the Mycobacterium avium tandem repeat (MATR) loci (MATR-VNTR) is employed in Japan for epidemiological studies using clinical isolates ...
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Characterization of Genetic Diversity of Bacillus anthracis in France by Using High Resolution Melting Assays and Multilocus Variable Number Tandem Repeat Analysis
... increasing the potential resolving power of this approach. Based on its ease of use, simplicity, flexibility, low cost, non- destructive nature, high sensitivity, and specificity, HRM anal- ysis is quickly becoming the ...
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Fully integrated, fully automated generation of short tandem repeat profiles
... Figure 4 shows a flowchart of the processes that occur during an instrument run. Following insertion of the BCSC into the instrument, bursting of reagent foils takes place. At this point, two parallel processing scripts ...
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Evaluation of the TbgI2 and TbgI17 Tandem Repeat Antigens as Potential Antigens for the Diagnosis of Trypanosoma brucei rhodesiense
... [11] Lumbala, C., Biéler, S., Kayembe, S., Makabuza, J., Ongarello, S. and Ndung’u, J.M. (2018) Prospective Evaluation of a Rapid Diagnostic Test for Trypanosoma brucei gambiense Infection Developed ...
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