core genome multilocus sequence typing
Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome Wide Typing of Clostridium difficile
... and typing nomenclature are missing. Here we report a core genome multilocus sequence typing (cgMLST) approach developed for ...MLST sequence types with Bayesian inference ...
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Hash Based Core Genome Multilocus Sequence Typing for Clostridium difficile
... to core genome multilocus sequence typing (cgMLST) in which alleles at each gene are reproducibly converted to a unique hash, or short string of letters ...replicate sequence ...
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Core Genome Multilocus Sequence Typing: a Standardized Approach for Molecular Typing of Mycoplasma gallisepticum
... on sequence analysis of 5 loci remains insufficient for accurate outbreak ...massive sequence data and the diverse properties of different genes within bacterial genomes results in a lack of standard ...
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Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analysis in the Epidemiology of Brucella melitensis Infections
... molecular typing for outbreak tracing and genomic ...ence sequence analysis for Brucella melitensis, whereas gene-by-gene comparison through core-genome multilocus sequence ...
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A Core Genome Multilocus Sequence Typing Scheme for Enterococcus faecalis
... with genome sequences from the NCBI and SRA databases highlight the robustness of the selected target genes and thus the suitability of the scheme to investigate the relatedness of ...on core genome ...
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Phylogenetic Analysis of Mycobacterium tuberculosis Strains in Wales by Use of Core Genome Multilocus Sequence Typing To Analyze Whole Genome Sequencing Data
... isolate sequence was aligned to the Ridom SeqSphere M. tuberculosis core genome MLST (cgMLST) scheme of 2,891 core genes (GenBank accession number ...The genome of Mycobacterium ...
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Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole Genome Sequence Based Typing of Listeria monocytogenes
... MLST typing, a prerequisite for successful interlaboratory ex- change of ...gene typing (spa) and now contains ⬎ 300,000 typing entries originating from ⬎ 100 countries, might serve as a blueprint ...
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Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C coli Human Disease Isolates
... of sequence-based typing approaches, such as multilocus sequence typing (MLST), by substantially in- creasing the number of loci ...A core genome MLST (cgMLST) scheme de- ...
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Core Genome Multilocus Sequence Typing Scheme for High Resolution Typing of Enterococcus faecium
... century, multilocus sequence typing (MLST) has been used to study the molecular epidemiology of ...a core genome MLST (cgMLST) scheme for ...transfers genome-wide single ...
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Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus
... the core gene loci within the database and grouping these into a ...the genome assembly against a database of known ...each genome assembly were recorded within the ...
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Determination of Accessory Gene Patterns Predicts the Same Relatedness among Strains of Streptococcus pneumoniae as Sequencing of Housekeeping Genes Does and Represents a Novel Approach in Molecular Epidemiology
... the core genome (multilocus sequence typing [MLST]), but these do not provide informa- tion on gene content that may affect the potential of isolates to cause invasive pneumococcal ...
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Multilocus Sequence Typing for Characterization of Staphylococcus pseudintermedius
... University, Genome Technology Core [Illumina technol- ogy] and the University of Florida Interdisciplinary Center for Biotechnology Research [Roche 454 technology]), with genomic DNA isolated from ...aureus ...
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Epidemiological Typing of Serratia marcescens Isolates by Whole Genome Multilocus Sequence Typing
... Next-generation sequencing (NGS) is becoming very popular in clinical microbiology (20, 21), but wgMLST for S. marcescens has not yet been described. WGS has been used to study S. marcescens virulence after wound ...
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The microbial ecology of Campylobacter jejuni in New Zealand within a spatial temporal framework : a thesis presented in partial fulfilment of requirements for the degree of Doctor of Philosophy in Veterinary Science at Massey University, Manawatu, New Zealand
... The multilocus sequence typing system uses an allelic profile based on loci that are part of the core genome and this has been used for source attribution [99] ...
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Whole Genome Multilocus Sequence Typing of Extended Spectrum Beta Lactamase Producing Enterobacteriaceae
... of core genome targets could be detected in the assembled genome was excluded from wgMLST ...of core genome targets present in the assembled ge- nomes was at least ...accessory ...
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Development of a multilocus sequence typing scheme for the molecular typing of Mycoplasma pneumoniae
... Description of Mycoplasma pneumoniae strains used in this study, their sequence type ST and allelic profile, and their MLVA and P1 types.. Strains isolated from the same patient are indi[r] ...
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A Trilocus Sequence Typing Scheme for Hospital Epidemiology and Subspecies Differentiation of an Important Nosocomial Pathogen, Enterococcus faecalis
... of multilocus sequence typing, pulsed-field gel electro- phoresis, and antimicrobial susceptibility typing for characterization of Sal- monella enterica serotype Newport ...
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Multilocus Sequence Typing of Pathogenic Candida Species
... Each sequence is compared with the reference database for the ...existing sequence, it is assigned that sequence’s allele number ...new sequence, details are sent to the Web database curator, who ...
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Multilocus Sequence Typing Scheme for Enterococcus faecium
... A multilocus sequence typing (MLST) scheme has been developed for Enterococcus ...62 sequence types were detected in vancomycin-sensitive ...
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Multilocus Sequence Typing System forCampylobacter jejuni
... Multilocus sequence typing (MLST) (20) has been success- ful in the characterization of several other bacteria (1, 8, 20, ...as multilocus enzyme electrophoresis (29), in that neutral genetic ...
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