Genomic prediction
Genomic Prediction Within and Among Doubled-Haploid Libraries from Maize Landraces
... of genomic prediction (GP) for line per se performance in DHL from six European landraces and 53 elite flint (EF) lines by comparing four scenarios: GP within a single library (sL); GP between pairs of ...
12
Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes
... ABSTRACT Today, genomic prediction (GP) is an established technology in plant and animal breeding programs. Current standard methods are purely based on statistical considerations but do not make use of the ...
13
Genomic Prediction in Animals and Plants: Simulation of Data, Validation, Reporting, and Benchmarking
... The genomic prediction of phenotypes and breeding values in animals and plants has developed rapidly into its own research fi ...of genomic prediction studies are often dif fi cult to compare ...
26
Needles: Toward Large-Scale Genomic Prediction with Marker-by-Environment Interaction
... Explicitly modeling M 3 E effects can lead to huge num- bers of effects to be estimated because every marker is cou- pled once to each environmental condition. For instance, when plants are tested in 100 different ...
16
Genomic prediction of celiac disease targeting HLA-positive individuals
... Background: Genomic prediction aims to leverage genome-wide genetic data towards better disease diagnostics and risk ...a genomic risk score (GRS) for celiac disease (CD), a common and highly ...
11
Can Deep Learning Improve Genomic Prediction of Complex Human Traits?
... in genomic prediction are much simpler (SNP genotypes can take only three values) and much more structured than the ones used in computer vision or other areas where DL has ...DNA-based prediction ...
11
A penalized linear mixed model for genomic prediction using pedigree structures
... genetic prediction can be improved by com- bining pedigree structure and information from genetic ...main prediction power comes from the pedigree informa- ...for genomic prediction may be a ...
5
Genetic Mapping and Genomic Prediction of Maize Quantitative Traits.
... improving prediction accuracy, especially in our TAGGING framework where the hypothesis spaces can now be more easily ...different genomic prediction (including Bayesian) models did not result in ...
169
The Effect of Linkage Disequilibrium and Family Relationships on the Reliability of Genomic Prediction
... of genomic prediction was predicted for five scenarios with simulated genotypes for selection candidates and using a reference population composed of real individuals with genotypic ...of genomic ...
13
DAIRRy-BLUP: A High-Performance Computing Approach to Genomic Prediction
... the genomic prediction setting is still an order of magnitude smaller than the number of genetic markers on widely used SNP arrays, favoring algorithms that directly estimate EBVs, which is in this case ...
12
Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator
... of genomic analyses and to optimize experimental design, existing software cannot realistically simulate complete ...in genomic prediction compared to SNP ...for genomic selection, including ...
15
A two step Bayesian approach for genomic prediction of breeding values
... for genomic selection introduced by Meuwissen et al [1]; ...build genomic relationship matrix emerged some years later and it was shown that G-BLUP and SNP-BLUP are equivalent models ...for genomic ...
5
The Effects of Demography and Long-Term Selection on the Accuracy of Genomic Prediction with Sequence Data
... of prediction depends on the strength of linkage disequilibrium (LD) between SNPs and causal ...evaluated genomic prediction, using simulated sequence in two con- trasting populations: one reducing ...
16
Accurate Genomic Prediction of Human Height
... Beyond the theoretical considerations given above, the practical outcome of our work is to significantly improve accuracy in genomic prediction of complex phenotypes. Using these predictors, one can, for ...
21
Genome Properties and Prospects of Genomic Prediction of Hybrid Performance in a Breeding Program of Maize
... on genomic prediction with training sets consisting of crossbred individuals (Ibánez-Escriche et ...that genomic prediction models that fitted specific marker effects for the parental popula- ...
19
The Dimensionality of Genomic Information and Its Effect on Genomic Prediction
... the genomic information may be redundant and in fact overfitted the ...the genomic information (defined as the number of the larger, informative eigenvalues) in this study does not exceed ...For ...
9
Genomic Prediction of Tropical Maize Resistance to Fall Armyworm and Weevils: Genomic Selection Should Focus on Effective Training Set Determination
... associated genomic regions through genetic linkage and GWAS methods, both with several shortcomings, especially for complex traits (21–23) and have seldom been conducted in African germplasm (8,24), further ...
25
Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize
... and genomic information on the parent lines have been used for predictions of breeding values, and the major- ity of studies in the past decade focused on conceiving and improving algorithms for exploiting the ...
13
Genomic Prediction and QTL Validation for Resistance to Fusarium Ear Rot And Fumonisin In Maize.
... Only small differences in prediction accuracy were observed between one step to two- step model for all traits (Figure 2.6). Previous studies have suggested that a one-step model might increase accuracy due to the ...
191
Genomic BLUP Decoded: A Look into the Black Box of Genomic Prediction
... that genomic BLUP exploits LD, cosegregation, and additive-genetic relationships captured by SNPs in analyses that explicitly define LD and cosegregation in- ...or genomic breeding values by a pedigree ...
11