multiple molecular sequence alignment
Progressive Multiple Sequence Alignment with Indel Evolution
... Usually mutations are considered as random events. This is true when we are considering whether they bring or not any advantage. However, not all types of mutations happen with equal probability, some appear more fre- ...
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19. Jiaping Yan, Xiangxiang Meng, Feng Xu and Jie Chang
... theoretical molecular weight and isoelectric point (pI) of the deduced CnPMK protein were predicted to be ...respectively. Multiple sequence alignment of CnPMK amino acid sequences with PMKs ...
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Cluster Analysis Method for Multiple Sequence Alignment
... of molecular sequence that is more resistant to change is functionally more important to the ...of sequence alignment. The problem of multiple sequence alignment (MSA) is ...
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Molecular Characterization and Phylogenetic Analysis of Culex quinquefasciatus by DNA Barcoding
... species sequence is found to be novel when compared to other geographical regions of the world, therefore, the same sequence was submitted to NCBI-Nucleotide database and acces- sion number of JX08870 was ...
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Assessing the efficiency of multiple sequence alignment programs
... Background: Multiple sequence alignment (MSA) is an extremely useful tool for molecular and evolutionary biology and there are several programs and algorithms available for this ...the ...
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Genomic Organization and Sequence of the Human NRAMP Gene: Identification and Mapping of a Promoter Region Polymorphism
... Amino acid sequences for murine and human NRAMP were aligned with yeast SMF1 and SMF2 (18) using the multiple sequence alignment program Clustal V (19).... 196 Molecular Medicine, Volume[r] ...
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Beta glucosidase from thermotolerant yeast Pichia etchellsii: Gene sequencing, cloning and functional expression in Methylotrophic yeast Pichia pastoris
... The multiple sequence alignment using ClustalV program of DNASTAR showed high degree of homology with members of Genus Kluveromyces, ...BGL1 sequence. The sequence was thus concluded to ...
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Molecular Characterization of Snowdrop Lectin (GNA and its Comparison with Reported Lectin Sequences of Amaryllidaceae
... – multiple DNA sequence alignment indicating the presence of conserved sequence regions in some different Amaryllidaceae mannose-binding agglutinin lectins including Galanthus nivalis, ...
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Insights of Rv2921c (Ftsy) Gene of Mycobacterium tuberculosis H37Rv To Prove Its Significance by Computational Approach
... [33]. Multiple sequence alignment result shows that this gene is universally present in all species of this bacterium with having some minute ...[53,54]. Molecular docking results of these ...
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Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment
... nucleotide sequence. This supports the notion that the molecular interactions between proteins and DNA are not solely limited to the chemical properties of the four different nucleotides which characterize ...
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Inferring phylogenies of evolving sequences without multiple sequence alignment
... the sequence sets N (Fig. 6a) and within-set sequence similarity ...small sequence sets ...larger sequence sets of N ...within-set sequence similarity (percent identity; ID) regardless ...
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Refin-Align: New Refinement Algorithm For Multiple Sequence Alignment
... a multiple sequence alignment. Re- fining alignment consists on constructing a new more accurate multiple sequence alignment from an initial one by applying some ...our ...
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Learning to Paraphrase: An Unsupervised Approach Using Multiple Sequence Alignment
... Our work presents a novel knowledge-lean algorithm that uses multiple-sequence alignment (MSA) to learn to generate sentence-level paraphrases essentially from unannotated corpus data alone. In ...
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sORFs.org : a repository of small ORFs identified by ribosome profiling
... Small open reading frames (sORFs) can be defined as open reading frames smaller than or equal to 300 nu- cleotides (100 amino acids). These ‘sORFs’, while inher- ent to all genomes, were historically ignored in gene an- ...
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Effect of positional dependence and alignment strategy on modeling transcription factor binding sites
... sorted alignment algorithm in all combinations of other ...different alignment algorithms according to the null hypothesis mentioned ...sorting-based alignment strategy in all ...
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Bioinformatics Analysis of the Novel Conserved Micropeptides Encoded by the Plants of Family Brassicaceae
... acid sequence was used to determine the polarity, accessibility, bulkiness and refractivity by using Protscale Server on ExPasy platform ...half-life, molecular weight, and amino acid composition of ...
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Molecular Footprint of Kenya’s Gene Bank Repositories Based on the cp Genome Signatures
... raw sequence files were inspected and corrected prior to phylogenetic analysis using BioEdit software version ...nucleotide alignment generated using CLUSTAL W (Thompson et ...The alignment file was ...
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Multiple sequence alignment algorithms for the phylogenic analysis of chloroplast DNA
... optimal alignment of the columns of two multiple sequence alignments under the sum-of-pairs objective with linear ...a multiple alignment by the sum of the scores of the ...
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In silico study to breaking mystery of bioluminescence protein structure of bacterial luciferase and firefly luciferase
... Based on the protein multiple sequence alignment (Figure 1), both luciferases shared very low homology (<30% homology). No conserved amino acid can be found in both enzymes because of the ...
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DNA Sequence alignment using programme by algorithm
... every sequence, are most useful when the sequences in the query set are similar and of roughly equal ...global alignment technique is the Needleman–Wunsch algorithm, which is based on dynamic ...similar ...
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