population structure
Nonparametric approaches for population structure analysis
... of population structure has many applications in medical and population genetic ...genetic population substructure and is a crucial prerequisite for any analysis of genetic ...uncover ...
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The effect of clumped population structure on the variability of spreading dynamics
... a population structure, individuals are homogeneous, and the network topology (de- fined by within and between clump contact rates) also exhibits the desirable ‘small worlds’ property of high clustering and ...
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Population Structure and Association Analysis in a Diverse Population of Eastern North American Winter Wheat.
... the population based on coancestry (Zhu et ...reflect population structure; rather, they may reflect family relatedness (Patterson et ...the population and genetic ...
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Admixture, Population Structure, and F-Statistics
... study them under a wide range of population structure mod- els. I then review some basic properties of distance-based phy- logenetic trees, show how the admixture tests are interpreted in this context, and ...
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The population genomics of begomoviruses: global scale population structure and gene flow
... sub-population structure we have uncovered, it must be pointed out that viruses from many “narrow- host range” sub-populations infect the same individual plant species as viruses sampled from “ broad host ...
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Genetic Diversity and Population Structure of Teosinte
... Figure 2.—Unrooted phylogeny of individual teosinte plants using the Fitch-Margoliash method and the log-transformed proportion of shared-allele distance among 93 microsatellite loci. The tree contains 237 individuals. A ...
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Analysis of Population Structure in Autotetraploid Species
... Population structure parameters commonly used for diploid species are reexamined for the particular case of tetrasomic inheritance (autotetraploid ...of population structure are derived ...
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Recombination and population structure in salmonella enterica
... its population structure was long described as clonal, based on high linkage disequilibrium between loci typed by enzyme electrophoresis, recent examination of gene sequences has revealed that recombination ...
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A Unified Characterization of Population Structure and Relatedness
... “population structure and [cryptic] relatedness are different aspects of a single con- founder: the unobserved pedigree defining the (often distant) relationships among the study ...sample structure, ...
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Recombination and population structure in salmonella enterica
... its population structure was long described as clonal, based on high linkage disequilibrium between loci typed by enzyme electrophoresis, recent examination of gene sequences has revealed that recombination ...
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Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced
... the population structure and detailed molecular epidemiology ...pneumococcal population compared to sam- ples from the same communities in 2009 ...cal population with continued PCV13 ...
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Population structure of Sclerotinia homoeocarpa from turfgrass
... Many tools have been employed to investigate the genetic diversity and population structure of fungal pathogens. Currently, one of the most widely accepted and utilized methods is multilocus sequence ...
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Population structure of palms in rainforests frequently impacted by cyclones
... the population structures of Sites A1, C and D were assessed in July 2007; Sites A2 and B in August 2008 and Site E in May ...of population structure, one cluster of palms was counted as one ...
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Population Structure and Eigenanalysis
... uncover structure in the samples being ...where population structure may cause spurious disease associations [1,40–43]; and in population genetics, where our statistical methods provide a ...
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Population Structure and Dynamics of Magnaporthe grisea in the Indian Himalayas
... much population genetics theory is propose that sexual recombination in filamentous fun- based, bacteria and many fungi are haploid and have gal species that are believed to have completely lost this asexual ...
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Inference of Population Structure Using Multilocus Genotype Data
... infer population structure and assign individuals to ...of population structure, assigning individuals to populations, studying hybrid zones, and identifying migrants and admixed individu- ...
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Population structure of graptolite assemblages
... the population structure of ...of population dynamics have been more extensive, but have generally concentrated on community analysis or variations within a population for purely taxonomic ...
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A genomic overview of the population structure of Salmonella
... We have pursued still another alternative, a soft core genome: in Salmonella, this consists of 3,002 genes (Table 1) that were found to be present in 98%, intact in 94%, and of unexcep- tional diversity in 3,144 ...
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Genetic Diversity and Population Structure ofVibrio cholerae
... the rfb region of V. cholerae, based on studies of relatively small numbers of strains and serogroups. Our observation that strains of the same serogroup frequently are found in diver- gent, even distantly related, ...
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Correlation of Rhs elements with Escherichia coli population structure.
... This correlation exists at several levels: the presence of R h s core homology in the strain, the location of the R h s elements present, and the identity of th[r] ...
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