structure alignment
Structure Alignment Using Bilingual Chunking
... for structure alignment is ...conducts alignment on chunks. The alignment is finished through a simultaneous bilingual chunking ...English-Chinese structure alignment show that ...
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Some studies on protein structure alignment algorithms
... progressive alignment algorithm falls under the class of heuristic algorithms as it sometimes comes out with an optimal solution and sometimes with not-so-good ...
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The difficulty of protein structure alignment under the RMSD
... Conclusions: We showed insights and techniques which we hope will lead to practical algorithms for the LCP problem for protein structures. The study identified two important factors in the problem’s complexity: (1) The ...
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Automatic Translation Template Acquisition Based on Bilingual Structure Alignment
... templates. Structure alignment has been studied by several researchers for use in structural translation template ...phrase structure grammar, while Grishman employed a regularized syntactic ...
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Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison
... and structure analysis are two of the fundamental areas of bioinfor- matics ...protein structure related problems including protein structure alignment and query, and genome sequence related ...
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FlexSnap: Flexible Non-sequential Protein Structure Alignment
... global alignment that maximizes the ...the alignment is sequential and thus non-topological simi- larity cannot be detected, and second, it is difficult to design a scoring function that is globally optimal ...
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Sequence and structure alignment of Paramyxoviridae attachment proteins and discovery of enzymatic activity for a morbillivirus hemagglutinin.
... the alignment of morbilli- virus H with other neuraminidases or transneuraminidases is complex, especially the alignment of the first sheet and the location of the second stem ...to alignment ...
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Sequence and structure alignment of paramyxovirus hemagglutinin-neuraminidase with influenza virus neuraminidase.
... 26 by including most of the amino acids known to be important for substrate binding in influenza virus neuraminidase and further suggests how bacterial neuraminidase sequences could be o[r] ...
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TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison
... secondary structure elements in a topology string in order to match the backbone of two ...Classical structure alignment techniques such as dynamic programming often require a set of optional ...
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CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments
... identical structure models with respect to side-chain or backbone positioning [4, ...for structure alignments used in the test cases, although any sequence or structure alignment code could be ...
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Alignment by Agreement
... Another common type of errors are precision er- rors due to the models overly-aggressively prefer- ring alignments that preserve monotonicity. Our HMM model only uses 11 distortion parameters, which means distortions are ...
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Robust Sub Sentential Alignment of Phrase Structure Trees
... Lexical alignment is crucial in identifying complex phenomena such as long dis- tance ...structural alignment algorithm may provide more accurate ...
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Transliteration Alignment
... 1) alignment entropy vs. F -score, 2) the impact of alignment quality on transliteration accuracy, and 3) how to validate transliteration using alignment ...5.1 Alignment entropy ...
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An enhanced RNA alignment benchmark for sequence alignment programs
... iterative alignment strate- gies generally perform better than progressive approaches on protein alignments ...iterative alignment approach – and CLUSTALW as the standard progressive, non-iterative ...
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INTERPLAY BETWEEN MULTIPLE ALIGNMENT AND STRUCTURAL ANALYSIS OF PROTEINS: SEQUENCE VERSUS STRUCTURE SIMILARITY. (SHORT REVIEW)
... The rapid increase in experimental data ,along with recent progress in computational methods has brought modern biology a step closer towards solving one of the most challenging problems: prediction of protein function ...
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Alignment Model Adaptation for Domain Specific Word Alignment
... Using these parameters, we build two adaptation models and a translation dictionary on the training data, which are applied to the testing set. The evaluation results on our testing set are shown in Table 1. From the ...
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Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin
... correlation alignment of each frame with respect to a running average of the (aligned) frames (Kunath et ...after alignment, showing that even seriously drifted movies can be ...
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ALIGNMENT ASSUMPTIONS
... the alignment designed in the feasibility study did not allow enough margin to account for the actual product choices and technical constraints that will be identified later ...
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On partitioning for ontology alignment
... Partitioning strategies in [3], [4], and [5] all follow a similar method but differ in whether ontology partitioning is done dependent or independent of the alignment task and when the dependence is incorporated. ...
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SHAFT ALIGNMENT IN SHIP
... The present methodology used in new construction ships is installation of shaft during the dry dock phase based on gap/sag methodology. While undertaking these checks, A-bracket and stern tube clearances are monitored to ...
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