[PDF] Top 20 Comparison of Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Investigation of Clostridium difficile Transmission
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Comparison of Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Investigation of Clostridium difficile Transmission
... C. difficile genome known to contain short tan- dem repeats, designated A6, B7, C6, E7, F3, G8, and H9, were ...of repeat numbers (data not ... See full document
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Comparison of Multilocus Variable Number Tandem Repeat Analysis and Whole Genome Sequencing for Investigation of Clostridium difficile Transmission
... C. difficile genome known to contain short tan- dem repeats, designated A6, B7, C6, E7, F3, G8, and H9, were ...of repeat numbers (data not ... See full document
9
Multilocus Variable Number Tandem Repeat Analysis for Investigation of Clostridium difficile Transmission in Hospitals
... C. difficile-genotyping tool is provided by direct comparison of MLVA with REA ...C. difficile strains according to the HVA-defined REA groups and ...spanning-tree analysis of the study group ... See full document
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Multilocus Variable Number Tandem Repeat Analysis and Multilocus Sequence Typing Reveal Genetic Relationships among Clostridium difficile Isolates Genotyped by Restriction Endonuclease Analysis
... C. difficile infections ...recent investigation of ribotype 078 prevalence using a different MLVA scheme ...C. difficile in retail ground meat emphasizes the concern regard- ing animal-to-human ... See full document
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Multilocus Variable Number Tandem Repeat Analysis of Clostridioides difficile Clusters in Ribotype 027 Isolates and Lack of Association with Clinical Outcomes
... and whole-genome sequencing (WGS) have a good level of concordance and were both useful to investigate transmission and genetic relatedness of ...in sequencing technologies could soon ... See full document
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Relatedness of Human and Animal Clostridium difficile PCR Ribotype 078 Isolates Determined on the Basis of Multilocus Variable Number Tandem Repeat Analysis and Tetracycline Resistance
... Interspecies transmission or transmis- sion through meat are suggested as sources of infection, but these are not yet established (10, 19, ...possible transmission routes between humans and ... See full document
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Multilocus Variable Number Tandem Repeat Analysis Scheme for Chlamydia felis Genotyping: Comparison with Multilocus Sequence Typing
... nine tandem-repeat loci identified in the C. felis Fe/C-56 genome by the program Tandem Repeat Finder, four were ...The analysis of about 140 ...As transmission of ... See full document
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Utilizing Rapid Multiple Locus Variable Number Tandem Repeat Analysis Typing To Aid Control of Hospital Acquired Clostridium difficile Infection: a Multicenter Study
... lostridium difficile is an important cause of hospital-acquired infection, causing a range of symptoms from diarrhea to toxic megacolon and ...C. difficile infec- tion (CDI) rose across North America and ... See full document
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Utility of Whole Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance
... of whole-genome sequencing (WGS) for outbreak detection and epidemiological surveillance of ...Personal Genome Machine. A total of 8,721 variable sites in the core genome were ... See full document
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Extended Multilocus Variable Number Tandem Repeat Analysis of Clostridium difficile Correlates Exactly with Ribotyping and Enables Identification of Hospital Transmission
... Discriminatory power. All MLVA typing methods had high discriminatory powers, generating D values of 0.999 for eMLVA and the van den Berg method and 0.997 for the Marsh method, compared to a D value of 0.886 for PCR ... See full document
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Characterization of Genetic Diversity of Bacillus anthracis in France by Using High Resolution Melting Assays and Multilocus Variable Number Tandem Repeat Analysis
... polymorphic tandem-repeat markers, SNPs exhibit an extremely low mutation rate that makes them very valuable for broadly defining major phyloge- netic divisions (13, ...large number of SNPs scat- ... See full document
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Utility of Multilocus Variable Number Tandem Repeat Analysis as a Molecular Tool for Phylogenetic Analysis of Shigella sonnei
... phylogenetic analysis of Yersinia pestis, a highly monomorphic pathogen; the MLVA data based on 25 VNTR markers could effectively separate panels of isolates of different biovars, and typing based on 7 highly ... See full document
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Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement
... A minimum spanning tree (MST) was also created based on the categorical data sets (Figure 2). All the MLVA profiles in cluster A clustered into a single clonal complex in the MST, and all isolates belonging to cluster A ... See full document
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Selection and Validation of a Multilocus Variable Number Tandem Repeat Analysis Panel for Typing Shigella spp
... multiple-genome comparison of five genomes identified 32 TRs (repeat unit size, ⬎ 9 bp; repeat sequence conservation, ⬎ 80%) predicted to show at least two alleles among the five available ... See full document
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Clostridium difficile: Investigating Transmission Patterns Between Infected and Colonized Patients Using Whole Genome Sequencing
... 1 Summary of main point 2 Using whole genome sequencing of isolates from a cohort of patients with Clostridium 3 difficile infection CDI and colonization, we found that incident CDI case[r] ... See full document
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Use of Multilocus Variable Number Tandem Repeat Analysis for Typing Mycobacterium avium subsp paratuberculosis
... Comparison of IS900 RFLP typing and MLVA-associated variation. The 22 strains of RFLP type R01 could be subdi- vided into six different combined VNTR types, providing a subdivision of the largest group of IS900 ... See full document
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Multilocus variable number tandem repeat analysis of clinical isolates of Aspergillus flavus from Iran reveals the first cases of Aspergillus minisclerotigenesassociated with human infection
... nitrogen, and the mycelia were ground to a fine powder with a small plastic pestle (VWR Scientific) and then re- suspended in 400 μl lysis buffer (50 mм Tris–HCl, 100 mм NaCl, 5 mм EDTA, 1% SDS). Five microlitres of ... See full document
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Epidemic spread of ST1-MRSA-IVa in a neonatal intensive care unit, Italy
... to assess, because both interventions are usually imple- mented as a part of a composite pattern of infection control procedures [20, 23, 27]. Decolonization of staff and patients by mupirocin proved unable to control a ... See full document
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A Predominant Variable Number Tandem Repeat Cluster of Mycobacterium tuberculosis Isolates among Asylum Seekers in the Netherlands and Denmark, Deciphered by Whole Genome Sequencing
... Data analysis. WGS data analysis was performed in R Statistics (version ...esx, repeat, polyketide, pks, or transposase were excluded during WGS data ... See full document
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Multilocus Variable Number Tandem Repeat Method for Typing Salmonella enterica Serovar Newport
... MLVA divided 132 S. Newport isolates into 40 different types, where a type is defined as a set of alleles that is different from other isolates at one or more loci and where a null amplification product is considered a ... See full document
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