[PDF] Top 20 Data Dependencies in the Quantitation of Affymetrix Gene Expression Data
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Data Dependencies in the Quantitation of Affymetrix Gene Expression Data
... the quantitation algorithms a priori. Similar to checking data for the evidence of normality before using a t-test, it’s likely that some quantitation algorithms will be more appropriate according to ... See full document
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Gene Expression Data Analysis for Stomach Cancer
... relational expression, was used to query GEO and ...with Affymetrix platform. Fig 3 displays the result of data sets obtained for the query ... See full document
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GENE EXPRESSION DATA ANALYSIS USING DATA MINING ALGORITHMS FOR COLON CANCER
... the gene selection, which is to get the list of genes that might be informative for the prediction of tumor suppressor genes (`TSGs) and proto ontogenesis by statistical, information theoretical ...the gene ... See full document
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A gene signature for post-infectious chronic fatigue syndrome
... redundant Affymetrix probe-sets was first mapped to Entrez Gene identifiers [21] and then submit- ted to the IPA ...Entrez Gene identifier was mapped to its corresponding object in the Ingenuity ... See full document
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Epithelial to mesenchymal transition (EMT) is associated with attenuation of succinate dehydrogenase (SDH) in breast cancer through reduced expression of SDHC
... the Affymetrix breast cancer ...that expression of the EMT315 signature, TWIST1, and SNAI2 was con- sistently linked to HIF-1 target genes associated with gly- colysis, apart from GLUT3 ...The ... See full document
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Effective gene selection techniques for classification of gene expression data
... one gene, other arrays usually only spot one longer oligonucleotide or a complete complementary deoxyribonucleic acid (cDNA)) (Schena, ...and data is gathered for further ... See full document
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A Representation for Complex and Evolving Data Dependencies in Generation
... When the Referring Expression generation module runs, it can recover the Centering information by inspecting the partial syntactic representations for the phrases it is supposed to gener[r] ... See full document
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How high is the level of technical noise in microarray data?
... of gene expression is likely to reflect the tightness of control of a particular gene func- tion by genomic regulatory ...microarray data such as preparation of samples, labeling, ... See full document
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Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data
... This data indicates that data on differen- tial expression in japonica might be more stable than those in ...differential expression pat- terns identified in the two cultivars in Liu et ...our ... See full document
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Celsius: a community resource for Affymetrix microarray data
... the gene expression profiles of the 3,600 probesets across 1078 HG-U133A SNIDs annotated as pathologically ...these data may be retrieved from Celsius using the following R com- mands after ... See full document
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Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity
... expressed gene; DFW: dis- tribution-free weighted (method); FARMS: factor analysis for robust microarray summarization; FC: fold change; FP: false positive; ibmT: intensity-based moderated t-statistic; MAQC: ... See full document
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Revisiting adverse effects of cross-hybridization in Affymetrix gene expression data: do they matter for correlation analysis?
... between gene expression levels, involving thousands of genes, can be exhaustively explained by this ...the expression levels of miRNA are subject to a much higher variation than those mRNAs presented ... See full document
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Overview of biological database mapping services for interoperation between different 'omics' datasets
... Id converters. Thus, there are several other Id conver- ters that are part of other integrative analysis systems which are not reviewed here but might be of interest to researchers—such as Babelomics, 20 BioMart, 21 ID ... See full document
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Microarray data analysis: From hypotheses to conclusions using gene expression data
... different gene. For example, several different probes for one gene might be spotted on an ...little data or evidence available on the advantages or disad- vantages of pooling and in many cases the ... See full document
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Vector Quantization of Microarray Gene Expression Data
... compression, data compression, data transmission, facial recognition, radar signal processing, finance and insurance, production control, sale and marketing, and so ...structured data, with higher ... See full document
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An Exploratory Study of the Application of Big Data in Organizations in Ghana
... The population of this paper would look at the private sector specifically Small Medium Enterprise (SME) as well as Large Enterprises. “ The National Board for Small Scale Industries (NBSSI) which is the regulatory body ... See full document
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Gene Selection for Tumor Classification Using Microarray Gene Expression Data
... Many methods have been proposed in the past to reduce the dimensionality of gene expression data [3]. Several machine learning techniques have been successfully applied to cancer classification using ... See full document
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Classification of Cancer Gene Subtypes from Clustering of Gene Expression Data
... cancer gene expression dataset was downloaded from publicly available the cancer genome atlas (TCGA) ...of gene subtypes after clustering the ... See full document
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An Emerging Trend of Big Data for High Volume and Varieties of Data to Search of Agricultural Data
... The data in amount of large size in world is growing day by day. Data is growing because of use of digitization, internet, smart cell and social media and ...of data sets which is very large in size ... See full document
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Mixture modeling of microarray gene expression data
... One example is the quartet containing HNRPAB, PSMD2, TUBG1, and AHSA1. Each of these genes appears to be a mixture with very small p-value; Figure 1 is the histogram of the 0.3-power transformed expressions of TUBG1. The ... See full document
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