[PDF] Top 20 Efficient Alignment Algorithms for DNA Sequencing Data
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Efficient Alignment Algorithms for DNA Sequencing Data
... The DNA Next Generation Sequencing (NGS) technologies produce data at a low cost, en- abling their application to many ambitious fields such as cancer research, disease control, per- sonalized ... See full document
149
Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison
... structural data since 2000. According to the statistics of the RCSB Protein Data Bank [1], as of March 2008, over 49,000 protein structures have been reported, and in these structures there are over 100,000 ... See full document
127
Review on DNA damage, repair and DNA sequencing
... more efficient heuristic ...optimal alignment given a particular scoring function; however, identifying a good scoring function is often an empirical rather than a theoretical ... See full document
6
Automatic DNA sequencing for electrophoresis gels using image processing algorithms
... an efficient segmentation method named Enhanced-FCM, lane detection utilizing Gaussian function, and band detection by tracing each lane, renewing lost bands and eliminating repetitive ... See full document
6
Efficient Depletion of Host DNA Contamination in Malaria Clinical Sequencing
... to sequencing. Degraded DNA was removed using gel sepa- ...sequence data generated and compared treated versus untreated samples to determine the level of enrich- ment as well as the quality of ... See full document
7
An Efficient Method for Data Embedding and Image Encryption by using Dna and Chao’s Theory
... Secure data transmission are possible in images using Image encryption and data embedding ...common algorithms are used in Encryption process rsa and ...an data transmission is data ... See full document
7
SeedsGraph: an efficient assembler for next-generation sequencing data
... Sanger data assemblers and was optimized for large gen- ...suffix-prefix alignment for the overlap graph, and it is the most time-consuming and space-consuming ... See full document
9
A genomic data viewer for iPad
... include DNA sequen- cing data from the 1000 Genomes project [3], RNA sequencing data from the Human lincRNA Catalog [4,5], based on Illumina ’ s Human BodyMap ...2.0 data [6], and ... See full document
6
DNA Sequence alignment using programme by algorithm
... the alignment of lengthy, highly variable or extremely numerous sequences that cannot be aligned solely by human ...constructing algorithms to produce high-quality sequence alignments, and occasionally in ... See full document
5
Correction of DNA Sequencing Data with Spaced Seeds
... based algorithms, are faster and use less memory, but result in worse measurements as compared to other algorithms; as a result, they rarely lead in any ...filter algorithms, but not enough to ... See full document
62
Multicore algorithms for image alignment
... multi–core algorithms undoubtedly is imperative in the potential outcome of the ...of data, the performance increase approached the number of ...the data is small, the algorithm is not as ... See full document
157
NGS Short Read Alignment Algorithms and the role of Big Data and Cloud Computing
... Generation Sequencing (NGS) raises opportunities to the computational field for fast and accurate methods for the various challenges associated with NGS ...sequence data is prepared, it is ready for further ... See full document
5
SynthEx: a synthetic normal based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling
... published algorithms have attempted to ad- dress the challenges of detecting CNAs from WES; how- ever, to our current knowledge none has provided a comprehensive solution with the additional ability to re- duce ... See full document
14
DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis
... for DNA methylation sequencing analysis, it can be concluded that the current landscape of available pipelines and tools, especially for bisulfite sequencing data analysis, ap- pears chaotic ... See full document
13
Local DNA sequence alignment in a cluster of workstations: Algorithms and tools
... in DNA sequencing projects, and most of sequence comparison methods used are based on heuristics, that are faster but do not produce optimal align- ...their DNA entirely sequenced, and this reality ... See full document
8
Automatic Parallelization for Parallel Architectures Using Smith Waterman Algorithm
... generated data is accessible for computational analysis; the computation is even required for the interpretation of the ...sequence alignment the most common operation used in computational molecular ... See full document
10
S-Hadoop -An enhancement of H2 HadoopShruti Satpute, Shalaka Zaware, Ganesh Phapale, Shubham Shahane
... Big Data in ...of data locality in the cluster, jobs and tasks scheduling, and resource allocations in ...an efficient. Data Mining approach for Cloud Computing ...required data without ... See full document
5
LONETSSOM Platform: Enabling Distributed Processing, Managing and Mining of Biological Data through Fusion of Logical Network and Web Technologies in NETWORK Infrastructure
... associated data for increasing the importance of microarrays the biological problems that can be thus addressed, introduced versatility in their design, in an effort to satisfy researches demands for increased ... See full document
9
Multiple sequence alignment algorithms for the phylogenic analysis of chloroplast DNA
... optimal alignment of the columns of two multiple sequence alignments under the sum-of-pairs objective with linear ...multiple alignment by the sum of the scores of the two-sequence alignments induced on all ... See full document
74
Sequencing and identification of potential native strains of Beauveria SPP through internal transcribed spacer r DNA (RDNA ITS)
... B. bassiana has a wide host range, but difference in both host specificity and virulence among isolates has been reported (Ferron et al., 1991). Ribosomal genes and their ITS and IGS spacer regions have been widely used ... See full document
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