[PDF] Top 20 A generalized approach for estimating effective population size from temporal changes in allele frequency.
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A generalized approach for estimating effective population size from temporal changes in allele frequency.
... If sampling is before reproduction (plan 11), the initial sample and the 2N, gametes representing the effective population size (and, hence, all future generations) can[r] ... See full document
13
Likelihood-Based Estimation of the Effective Population Size Using Temporal Changes in Allele Frequencies: A Genealogical Approach
... generations), as few as ⵑ10 loci (heterozygosity of 0.6; samples of 30 individuals) are sufficient to consistently achieve credible intervals with an upper limit ⬍50 using the LB method. In contrast, ⵑ20 loci are ... See full document
11
Empirical Bayes Procedure for Estimating Genetic Distance Between Populations and Effective Population Size
... for estimating overdispersion is estimate can occur due to large sampling variance, as to compare the variation of sample allele frequencies shown in the ayu studies, because of the small sample obtained ... See full document
18
Estimating the effective population size from temporal allele frequency changes in experimental evolution
... dows with a fixed number of SNPs. Using windows of fixed lengths in base pairs would affect the variance of the estima- tor (Figure 4) but does not distort the mean. All these ap- proaches, however, do not account for the ... See full document
35
Estimating Effective Population Size and Migration Rates From Genetic Samples Over Space and Time
... our temporal approach is that of the populations (see, ...of population structures the estimation of effective size, methods employing a and migration patterns, ...priori from ... See full document
18
Estimating Effective Population Size from Temporally Spaced Samples with a Novel, Efficient Maximum-Likelihood Algorithm
... in population genetics ...small allele fre- quency as they make use of the full distributional information of the Wright–Fisher ...modeling allele frequency in the ...indistinguishable ... See full document
9
Maximum-Likelihood and Markov Chain Monte Carlo Approaches to Estimate Inbreeding and Effective Size From Allele Frequency Changes
... and allele loss): Combining the described by its founder frequencies p 0 , was submitted model accounting for gene loss and the sampling pro- to a further pure genetic drift process, with constant cess in the ... See full document
16
Using Maximum Likelihood to Estimate Population Size From Temporal Changes in Allele Frequencies
... Bayesian approach and then estimate a posterior distri- that it is more computationally intensive than using F-sta- bution for ...ral allele frequency data could be used to estimate popu- mance of ... See full document
8
A NEW METHOD FOR ESTIMATING THE EFFECTIVE POPULATION SIZE FROM ALLELE FREQUENCY CHANGES
... Esti- mates of effective population sizes and of the standard errors of the estimates are computed for data on two fly populations that have been discussed in earlier papers.. I[r] ... See full document
18
On the Distribution of Temporal Variations in Allele Frequency
... female effective from Drosophila ...842–854. population size of red drum (Sciaenops ocellatus) in the northern Williamson, ...estimate population size from temporal ... See full document
6
The Effective Size of a Subdivided Population
... identity due to coalescence in some particular genera- tion, T '. This is given by the probability of a coalescence in some deme k at time T ' , multiplied by the probability tha[r] ... See full document
15
Inferring Epidemiological Dynamics with Bayesian Coalescent Inference: The Merits of Deterministic and Stochastic Models
... The pathophysiology of HIV is multifarious, and the patterns of its advance- ment within an infected host change throughout time. In addition to increased complexity potentially caused by recombination events, the ... See full document
39
Depauperate genetic variability detected in the American and European bison using genomic techniques
... neutral allele having an initial allele frequency of 1/2 occurs sooner than loss of polymorphism in a single species and has an expected time of ...neutral allele to undergo fixation within a ... See full document
7
ANALYZING GENE-FREQUENCY DATA WHEN THE EFFECTIVE POPULATION SIZE IS FINITE
... the identical parent population, so that the estimates in the first generation are of the same gene frequency, then a more powerful approach for determining whether or not s[r] ... See full document
14
Redistribution of Gene Frequency and Changes of Genetic Variation Following a Bottleneck in Population Size
... bottlenecks (Lo ´ pez-Fanjul et al. 2002). Although over- dominance may be important in some situations in the maintenance of genetic variation and in causing inbreed- ing depression, it is unlikely to be common ... See full document
18
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.
... The method is somewhat more successful when it begins from a reasonable genealogy (data not shown). Genealogies from the short chains should not be used in the final es[r] ... See full document
10
Demographic Expansion and Contraction in a Neotropical Fish during the Late Pleistocene Holocene
... [3]. From the standpoint of demo- graphy, departures from stability, experienced as expansion or contraction in population size, are relevant events [4] ...of changes in ... See full document
14
The Equilibrium Allele Frequency Distribution for a Population with Reproductive Skew
... Aside from the diversity-minimization property we have demonstrated here, it has previously been observed, for instance, that among L-processes, the Wright–Fisher model minimizes the fixation probability of an ... See full document
18
Nonequilibrium Migration in Human History
... the effective size of the popula- When the number of demes is large, the genealogical tion, and apply the results to restriction fragment length history of a sample taken from such a ... See full document
9
The importance of modelling the spread of insecticide resistance in a heterogeneous environment: the example of adding synergists to bed nets
... of allele frequency com- paring the extremes cases of a fully effective (k = 0) and of a inefficient (k = 1) ...of allele spread can be higher when the synergist is fully effective (y > ...resistance ... See full document
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