[PDF] Top 20 Genotype-Frequency Estimation from High-Throughput Sequencing Data
Has 10000 "Genotype-Frequency Estimation from High-Throughput Sequencing Data" found on our website. Below are the top 20 most common "Genotype-Frequency Estimation from High-Throughput Sequencing Data".
Genotype-Frequency Estimation from High-Throughput Sequencing Data
... ) sequencing data on chro- mosome 6 for 81 individuals revealed 8,528,190 sites with minor-allele frequency (MAF) estimates ...alleles from sequence errors and the limited power of the ... See full document
24
Tools and best practices for retrotransposon analysis using high-throughput sequencing data
... Methods using only unique reads (FeatureCounts Unique alignments, repEnrich Unique, TEtranscripts Unique) underestimated some TE families of all classes (LTR, LINEs and SINEs), with repEnrich Unique being the least ... See full document
12
MICRA: an automatic pipeline for fast characterization of microbial genomes from high throughput sequencing data
... away from the right flanking sequence on the reference, or they overlap by more than 1 kbp, and both flanking sequences align on the same ...differ from the sequenced gen- ome, producing a relocation event ... See full document
14
Empirical assessment of sequencing errors for high throughput pyrosequencing data
... In the pyrosequencing method, the greatest source of error corresponds to under or over-estimation of the number of incorporated bases at each cycle because of the noise in the luminescence signal. Actually, the ... See full document
13
Accounting for Errors in Low Coverage High-Throughput Sequencing Data When Constructing Genetic Maps Using Biparental Outcrossed Populations
... maps from a set of ordered loci using sequencing data and overcomes a number of issues related to this ...varying sequencing depths across SNPs, which is typical of sequencing ... See full document
12
Salmonella Serotype Determination Utilizing High Throughput Genome Sequencing Data
... nella flagellar antigens make it difficult to map specific antigen types to individual genotypes or sequence variations (e.g., point mutations, insertions, and deletions). Closely related H antigens such as the G complex ... See full document
8
Viral expression associated with gastrointestinal adenocarcinomas in TCGA high-throughput sequencing data
... genomic data was available for KSHV-positive tumor and no HPV-18 was detectable in genomic DNA from tumors or normal cells, no viral load for these vi- ruses could be ...NGS data will be propor- ... See full document
12
Automated SNP genotype clustering algorithm to improve data completeness in high throughput SNP genotyping datasets from custom arrays
... 99.0%, data accuracy was checked by ensuring that the allelic distribution for all loci does not significantly differ from ...allele frequency estimation method taking account of family ... See full document
7
Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data
... coverage data as the rate of genotyping errors is much higher than those used in these simulations ...low sequencing depth, al- though the variability of these estimates were larger com- pared to the ... See full document
12
Genome-Wide Estimation of Linkage Disequilibrium from Population-Level High-Throughput Sequencing Data
... informative data; and unless they are statisti- cally accounted for, missing data are likely to introduce bias in population-genetic parameter estimates (Pool et ...at high coverages ap- proaching ... See full document
21
Molecular diversity and functional composition of cellulose degrading communities in anoxic environments
... sequences from metagenomic ...statistically high similarity to Pfam families representing glycoside hydrolase activity and therefore indicating reads in the metatranscriptome that partially encode proteins ... See full document
218
Original Article Identification and characterization of biomarker MicroRNAs by high through-put sequencing in bone metastasis
... Abstract: Poor prognosis of patients with non-small cell lung cancer (NSCLC) indicates that metastases occur often before diagnosis of the primary tumor. To identify differentially expressed miRNAs that could function as ... See full document
11
High Throughput Next Generation Sequencing of Polioviruses
... whole-genome sequencing of poliovirus isolates from culture supernatants and FTA card specimens, which are the standard sample types analyzed for global poliovirus ...steps from extraction to MiSeq ... See full document
10
Garch Parameter Estimation Using High Frequency Data
... Our data set is the ...The data were obtained from Nexa Technologies ...trade from 8:30 ...the data and $0.10 from 1997–11–01. The data set consists of 4655 trading ...a ... See full document
33
Visual programming for next-generation sequencing data analytics
... Background: High-throughput or next-generation sequencing (NGS) technologies have become an established and affordable experimental framework in biological and medical sciences for all basic and ... See full document
17
Analysis of Paramyxovirus Transcription and Replication by High-Throughput Sequencing
... directional sequencing following depletion of rRNA, rather than poly(A) selection, could achieve the quantification of both genome and mRNA/antigenome RNA from the same data ...rRNA from the ... See full document
17
Analysis of paramyxovirus transcription and replication by high throughput sequencing
... disengage from the genome at a GE site, rather than continuing to transcribe downstream genes, but if it does so it must reinitiate at the Le promoter to continue ...imental data, a theoretical model of the ... See full document
17
Identification of colorectal cancer-restricted microRNAs and their target genes based on high-throughput sequencing data
... Compared with normal tissues, there separately were 56 up- and 37 downregulated miRNAs in metastasis tissues, as well as eight up- and 30 downregulated miRNAs in tumor tissues (Table 1). Besides, there were 32 up- and ... See full document
8
High-throughput sequencing of cytosine methylation in plant DNA
... [66]. This technology, in which overlapping di-nucleotides rather than single bases are encoded in ‘colourspace’, allows robust detection of single nucleotide mismatches between sequence and reference. This appears ... See full document
9
Validation of high throughput sequencing and microbial forensics applications
... environment from which a sample originates but often cannot identify the microorganism of interest at the species or strain ...higher throughput and novel ...indistinguishable from one another ... See full document
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