[PDF] Top 20 Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov.

... A. obesi is susceptible to imipenem, ciprofloxacin, metronida- zole, nitrofurantoin and rifampicin, but resistant to penicillin G, amoxicillin, amoxicillin-clavulanic acid, erythromycin, vancomycin, gentamicin 15 ... See full document

... environment, in particular from soil, and from plants for which they play the role of growth pro- moters, but have also occasionally been isolated from humans, either as proven pathogens, causing bacteremia in leukemic ... See full document

... complete genome sequence and annotation. The 3,425,960 bp long genome (1 chromo- some but no plasmid) contains 3,064 protein-coding and 49 RNA ... See full document

... their genome sequence, MALDI-TOF spectrum and main phenotypic char- acteristics (habitat, Gram-stain reaction, cultiva- tion conditions, cell wall structure and metabolic ... See full document

... Open Reading Frames (ORFs) were predicted using Prodigal [22] with default parameters but the pre- dicted ORFs were excluded if they were spanning a sequencing GAP region. The predicted bacterial pro- tein sequences were ... See full document

... other type strains within the genus GenBank accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences obtained using the maximum-likelihood method within the MEGA ... See full document

... arginine arylamidase, tyrosine arylamidase, histidine arylamidase and leucine arylamidase. Cells are susceptible to penicillin G, amoxicillin, ceftriaxone, cefalexin, imipenem, fosfomycin, erythromycin, doxycyclin, ... See full document

... This latter value was lower than the 98.7% 16S rRNA gene sequence threshold recommended by Stackebrandt and Ebers to delineate a new species without carrying out DNA-DNA hybridization [40]. Different growth ... See full document

... catalase activity but no oxidase activity. Positive reactions were obtained for α galactosidase, argi- nine arylimidase, tyrosine arylamidase, histidine arylamidase, serine arylamidase and indole pro- duction. Weak ... See full document

... occurs at NaCl concentrations of 15-30%, at pH values in the range 7-11, and within the tempera- ture range 37-55 °C. Optimal NaCl concentration, pH and temperature for growth are 25%, 8.0 and 40 °C, respectively. ... See full document

... massilioanorexius sp. nov. This bacterium is a Gram-positive, non-spore-forming, aerobic and motile bacillus that was isolated from the stool of a 21-year-old Caucasian French female suffering from a ... See full document

... Colonies were smooth and transparent with 0.5 to 1 mm in diameter on blood-enriched Columbia agar. Optimal growth is only achieved anaerobi- cally and grows between 30 and 45°C, with opti- mal growth observed at 37°C. ... See full document

... 3,735,762 bp long (1 chromosome, but no plas- mid) with a 27,98% G + C content of (Figure 6 and Table 4). Of the 3,916 predicted genes, 3,843 pro- tein-coding genes, and 73 were RNAs. Eight rRNA genes (one 16S rRNA, one ... See full document

... complete genome sequence and annotation. The 5,431,633 bp long genome (1 chromosome but no plasmid) contains 5,179 protein-coding and 98 RNA genes, including 91 tRNA ... See full document

... complete genome sequence and its annotation. The 2,010,844 bp-long genome con- tains 1,909 protein-coding and 46 RNA genes, including two rRNA ... See full document

... Table 4). Of the 1,783 predicted genes, 1,738 were protein-coding genes, and 45 were RNAs. Three rRNA genes (one 16S rRNA, one 23S rRNA and one 5S rRNA) and 42 predicted tRNA genes were iden- tified in the genome. ... See full document

... translucent grey and 0.4 mm in diameter on blood-enriched Columbia agar. Cells are rod- shaped with a mean diameter of 0.58 µm and a mean length of 1.32 µm. Optimal growth is achieved in anaerobic conditions. No growth ... See full document

... Two mate pair libraries were prepared with 1 and 1.5 μg of genomic DNA using the Nextera mate pair Illumina guide. The genomic DNA sample was simultan- eously fragmented and tagged with a mate pair junction adapter. The ... See full document

... Colonies are 2 mm in diameter on blood-enriched Columbia agar and Brain Heart Infusion (BHI) agar. Cells are rod-shaped with a mean diameter of 1.1 μm. Optimal growth is achieved anaerobi- cally. No growth is observed in ... See full document

... specimen was preserved at −80 °C after collection and sent to Marseille. Strain JCE T (Table 1) was isolated in July 2013 by cultivation on blood culture bottle (Becton Dickinson, Temse, Belgique) supplemented with rumen ... See full document