Microarray analysis of gene expression
Microarray analysis of gene expression in lupus
... differential gene expres- sion. However, the analysis was not able to distinguish a gene expression profile that was distinct for SLE as com- pared with RA or other autoimmune ...induced ...
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Microarray Analysis and Gene Expression : A simplified Review
... in microarray analysis is to interpret these groups in terms of biological functions [26, ...differential analysis is to assess a significant threshold above which a gene or set of genes will ...
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Epigenetic therapy of acute myeloid leukemia using 5-aza-2'-deoxycytidine (decitabine) in combination with inhibitors of histone methylation and deacetylation
... For microarray analysis of gene expression, at 24 h after the end of drug treatment, total RNA was isolated from AML-3 cells using the RNAeasy Mini kit ...by microarray hybridization ...
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The C Proteins of Human Parainfluenza Virus Type 1 (HPIV1) Control the Transcription of a Broad Array of Cellular Genes That Would Otherwise Respond to HPIV1 Infection
... the gene expression profiles determined by microarray analysis were generally confirmed by the RT-qPCR analysis, indicating that this microarray platform yielded reliable ...
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Microarray analysis identifies a set of CXCR3 and CCR2 ligand chemokines as early IFNβ-responsive genes in peripheral blood lymphocytes in vitro: an implication for IFNβ-related adverse effects in multiple sclerosis
... Finally, the list of IRGs included various apoptosis regula- tors and HSP family members. ISRE-like sequences are identified in the regulatory element of CASP1, CASP4, CASP8, TNFRSF6 (FAS), TNFSF6 (FASL) and TNFSF10 ...
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Systematic dielectrophoretic analysis of the Ara C induced NB4 cell apoptosis combined with gene expression profiling
... of gene expression using microarray analysis and showed that the expression of genes related to membrane capacitance and cytoplasmic conductivity change dramatically as early as 2 hours ...
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Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors
... oligonucleotide microarray encompassing the annotated genes of the fire blight pathogen ...this microarray would be applicable to working with any ...HrpL-mediated gene expression, strains ...
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DNA Microarray Analysis of Chimpanzee Liver during Acute Resolving Hepatitis C Virus Infection
... the analysis of the factors involved in viral clearance, since greater than 60% of inocu- lated animals rapidly clear the infection (6, 7, ...and analysis of individuals at the time of exposure is ...in ...
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Deregulation Of The Hippo Pathway Suppresses Differentiation And Promotes Sarcomagenesis
... YAP1 expression and transcriptional activity is downregulated in sarcoma cells treated with SAHA/JQ1 in vitro and in vivo and that ectopic expression of constitutively nuclear YAP1 (YAPS6A mutant) can ...
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BioVLAB Microarray: Microarray Data Analysis in Virtual Environment
... in microarray data analysis is to execute multiple of analysis tasks as a single batch ...for analysis involves a series of execution of different analysis methods and it is often ...
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Elevated expression of eukaryotic translation initiation factor 3H is associated with proliferation, invasion and tumorigenicity in human hepatocellular carcinoma
... Gene expression was measured in EIF3H-siRNA and control siRNA infected HCC cells and compared using a Human Genome U133 Plus ...the microarray image ...only gene changes detected from at least ...
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Model based cluster analysis of microarray gene expression data
... incubated at 50°C for 25 min for the synthesis of radioac- tively labeled cDNA probes. The Atlas cDNA array mem- branes (Atlas rat 1.2 array, Clontech, CA) were hybridized with the cDNA probes and nonspecific binding ...
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Nonlinear gene cluster analysis with labeling for microarray gene expression data in organ development
... those gene clusters whose co-expressions correlate with processes in eye ...identify gene clusters enriched for functional GoMiner categories related to eye develop- ment, but the proposed nonlinear scheme ...
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Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9
... our analysis of zebrafish embryos and by a previous study that used adult mice (Dalal et ...hcrt expression, enabling us to screen for transcripts that are likely to play a role in the specification of Hcrt ...
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Microarray gene expression profiling and analysis in renal cell carcinoma
... Renal cell carcinoma (RCC) accounts for 3% of all malig- nancies with about 30,000 new cases and 12,000 deaths each year in the United States. RCC is the most common cancer in adult kidney and the most lethal cancer of ...
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Gene set analysis methods applied to chicken microarray expression data
... To adjust for multiple testing we applied FDR to the dif- ferent gene set tests. After adjustment most methods had no terms with p-value below 0.05 for all categories of GO terms, the exception being Globaltest. ...
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Independent component analysis of Alzheimer's DNA microarray gene expression data
... in microarray data ...in gene expression associated with the development of AD, and hence, to biologically analyze the significant genes with the devel- opment of AD, the control data were treated as ...
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Mixture modeling of microarray gene expression data
... mixture analysis approach to the clustering of microarray expression data, in particular, of tissue samples on a very large number of ...the gene expression variables, Simon's work [4] ...
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Vector Quantization of Microarray Gene Expression Data
... for analysis of gene expression data lies in the fact that LVQ has been used as a tool to minimize classification errors, by means of more appropriate discrimination between decision boundaries of ...
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Screening of feature genes of the ovarian cancer epithelia with DNA microarray
... Individual gene analysis (IGA) evaluates the significance of individual genes (approved by Ethical Committee of Shengjing Hospital of China Medical University) between two groups of samples ...power. ...
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