POPULATION HISTORY INFERENCE FROM GENOMIC DATA
Statistical inference from large scale genomic data
... values from the indices reflect the fact that model-based clustering methods are preferable to heuristic clustering methods such as K-means and hierarchical clustering for this data ...
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Statistical inference from large-scale genomic data
... genomic data. One focus involves using clustering as a method of inference and another is cluster validation to extract meaningful biolog- ical information from the ...gained from the ...
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Population Genetic Inference From Resequencing Data
... resequencing data to estimate recombination rates: the fact that while, under reasonable assumptions, reads can be mapped to a genomic location within an in- dividual, it is, at least under current ...
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An Integrated Framework for the Inference of Viral Population History From Reconstructed Genealogies
... the history of population size tion’s demographic history and its ...rapid from an observed distribution of pairwise ...sequence data has prompted the Although both of these methods can ...
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Joint Inference of Population Assignment and Demographic History
... genetic data is ...demographic history and population assignment. Genealogies and population assignments are sampled from a posterior distribution using a general ...
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Inference of Population History Using a Likelihood Approach
... different population histories that utilizes an explicit model of sequence evolution for the DNA segment under ...of population history parameters, we suggest a likelihood approach to conducting ...
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Bayesian Population Genomic Inference of Crossing Over and Gene Conversion
... empirical data sets that were sequenced in the telomeric regions of the X chromo- some of Drosophila melanogaster ...observed data, it is possible to obtain the distribution of gene-conversion breakpoints ...
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From alignment of etymological data to phylogenetic inference via population genetics
... etymological data, and on the population-genetics side, phylogenetic infer- ...our population-genetics model for phylo- genetic inference (step ...obtained from linguistic alignments ...
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The Effect of Recent Admixture on Inference of Ancient Human Population History
... resequencing data will soon be available from a variety of human popula- tions, we explored the performance of the SFS to estimate growth parameters using a larger data set from Pop ...sampled ...
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Genomic insights into the human population history of Australia and New Guinea
... 2017). From current data, population structure at least between western and eastern groups appears to be fairly old, at least ...time from Papua New ...lessons from the rest of the ...
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Likelihood-based inference of population history from low-coverage de novo genome assemblies
... Summaries are shown for in- and outgroup meta-assemblies (first four rows) and the a and b triplet data before and after length filtering. N50 is defined as the length N for which 50% of all sequenced bases are ...
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The Effect of Genomic Inversions on Estimation of Population Genetic Parameters from SNP Data
... detection, data on inversions in the human genome are increasing ...in population genetic data, invertFREGENE, to assess the potential impact of inversions on such ...Using data simulated by ...
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Demographic and Population Separation History Inference Based on Whole Genome Sequences.
... of population history using single or several whole genome ...resulted from statistical phasing on split time estimation is largely ...individuals from diverse populations using fosmid pool ...
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Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass
... life history characteristics that promote high levels of gene flow and can homogenize intraspecific differences, such as wind-pollination and ...switchgrass from across its range at 98 042 SNPs. ...
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Inference of Population Structure Using Multilocus Genotype Data
... of population structure, assigning individuals to populations, studying hybrid zones, and identifying migrants and admixed individu- ...genotype data from an endangered bird ...
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A Composite-Likelihood Method for Detecting Incomplete Selective Sweep from Population Genomic Data
... captures the hitchhiking effect of the beneficial allele, stochas- tic fluctuation of iHH A greatly increases the variance of iHH A / iHH D . In addition, if a small number, say n9, of sequences containing the derived ...
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Data integration by combining big data and survey sample data for finite population inference
... of data integration for handling big data by incor- porating survey sample ...big data is not necessarily ...big data sample and the survey sample even after adjusting for the auxiliary ...big ...
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Inference of Population Mutation Rate and Detection of Segregating Sites from Next-Generation Sequence Data
... variation data offers the promise of providing the key to the understanding and treatment of genetic ...sequence data at relatively low ...the population mutation ...of data from the ...
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Genealogical Inference From Microsatellite Data
... direct inference about both historical events, such as genealogical coalescence times, and evolutionary parameters, such as mutation ...genealogical history and evolutionary processes. We also reanalyze ...
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Inference of Historical Population-Size Changes with Allele-Frequency Data
... in population-genomic surveys, it is possible to estimate the site-frequency spectrum of such sites with high ...past population history, which only in fluences the segment lengths, providing ...
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