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A Tabu Search Approach to Multiple Sequence Alignment
... damaged [1]. The genetic information stored by DNA is transferred to RNA for protein synthesis. Protein synthesis is important because it accomplishes most of the functions of living cells such as catalyzing chemical ... See full document
114
Instability in progressive multiple sequence alignment algorithms
... a multiple sequence alignment is a rou- tine step in the analysis of homologous genes or ...heuristic approach termed “progressive alignment” by Feng and Doolittle ...pairwise ... See full document
10
SVM-based Automatic Annotation of Multiple Sequence Alignments
... Abstract—Multiple Sequence alignments are a critical step in phylogeny ...appropriate approach which is capable of 1) finding the best global alignment and 2) automating and reproducing manual ... See full document
8
Bioinformatic analysis of beta carbonic anhydrase sequences from protozoans and metazoans
... Uniprot search of potential β-CA sequences, and the subsequent multiple sequence alignment, identified 75 β-CAs in metazoan and protozoan species, of which 23 sequences were reported as β-CAs ... See full document
12
A Hybrid TS-DE Algorithm for Reliability Redundancy Optimization Problem
... neighborhood search (VNS) with an adaptive penalty ...(PSO) approach named PESDRO to solve a bi-objective redundant reliability problem; And the reliability redundant problems of series system, parallel ... See full document
8
Assessing the efficiency of multiple sequence alignment programs
... to alignment accuracy in all BAliBASE datasets, consistent with similar publications ...consistency-based approach in their algorithms, thus being a successful im- provement in sequence ... See full document
8
MSARC: Multiple sequence alignment by residue clustering
... Fiduccia-Mattheyses algorithm needs to be modified in order to deal with alignment graphs. Mainly, residues are not moved independently; since the graph topology has to be maintained, moving a residue involves ... See full document
11
Tabu assisted guided local search approaches for freight service network design
... with multiple-class freight services (for example first- class, second-class, and deferred services), where the planning has to foresee future ...of multiple classes would probably require the introduction ... See full document
32
Analysing Multiple DNA Sequence Alignment Algorithms Smith Waterman Algorithm and Parallel Smith Waterman Algorithm
... Abstract— Multiple DNA sequence alignment is one of the important research topics of ...automated sequence analysis facilitates everything from functional classification & structural ... See full document
6
Multiple Tabu Search for Multiobjective Urban Transit Scheduling Problem
... of Multiple Tabu Search (MTS) in multiobjective UTSP are known to ...selection approach is developed by modifying the initialization process and incorporating intensification and diversifi- ... See full document
24
Urban Transit Frequency Setting using Multiple Tabu Search with Parameter Control
... local search approach based on network flow model and TS algorithm is proposed by Xu and Kelly (1996) to solve a vehicle routing ...the search toward feasibility and diversity ... See full document
11
Multiple sequence alignment with user-defined anchor points
... Automated alignment procedures are based on simple algorithmical ...an alignment with maximum score in the sense of some underlying objective ...in sequence alignment are therefore (a) to ... See full document
12
Bootstrapping Lexical Choice via Multiple Sequence Alignment
... We first evaluated three individual components of our system: paraphrase thesaurus induction, argument-value selection in slotted lattice induction, and template induction. We also validated the utility of ... See full document
8
Prenominal Modifier Ordering via Multiple Sequence Alignment
... Their approach provides ordering deci- sions for adjectives, gerunds (such as “running” in “running man”), and past participles (such as “heated” in “heated debate”), as well as for modifying nouns (such as ... See full document
9
To Show the Multiple Alignment of the Image search Hash Efficiency
... neighbor search in large-scale data spaces, by embedding high-dimensional feature descriptors into a similarity- preserving Hamming space with a low ...combine multiple representations for learning ... See full document
10
Learning to Paraphrase: An Unsupervised Approach Using Multiple Sequence Alignment
... a multiple- sequence alignment (MSA) of the sentences in a given ...to multiple sequences via the iterative pairwise align- ment, a polynomial-time method commonly used in com- putational ... See full document
8
Comparative Analysis of Structure and Sequences of Oryza sativa Superoxide Dismutase
... The sequence similarity search using local BLAST shows that Mn SODs and Fe SODs have greater degree of similarity compared with that of Cu-Zn ...The multiple alignment reveals that seven amino ... See full document
11
Heuristics for multiobjective multiple sequence alignment
... of sequence alignment provides the practitioner a set of alignments that represents the trade-off between decreasing the number of gaps and increasing ...pairwise sequence (DNA/Protein) ... See full document
17
TarO : a target optimisation system for structural biology
... protein sequence is analysed by 17 algorithms and compared to 8 ...annotated multiple sequence alignment (MSA) that may be edited interactively in the program ... See full document
7
Insights of Rv2921c (Ftsy) Gene of Mycobacterium tuberculosis H37Rv To Prove Its Significance by Computational Approach
... [33]. Multiple sequence alignment result shows that this gene is universally present in all species of this bacterium with having some minute ... See full document
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