[PDF] Top 20 Comparison of Multiple Locus Variable Number Tandem Repeat Analysis with Pulsed Field Gel Electrophoresis, spa Typing, and Multilocus Sequence Typing for Clonal Characterization of Staphylococcus aureus Isolates
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Comparison of Multiple Locus Variable Number Tandem Repeat Analysis with Pulsed Field Gel Electrophoresis, spa Typing, and Multilocus Sequence Typing for Clonal Characterization of Staphylococcus aureus Isolates
... two isolates of which were split into MLVA clusters M8 ⬘ and M9 ⬘ ...diverse isolates of this phylogenetic lineage included in the analysis, clusters M8 ⬘ and M9 ⬘ would form a single one also under ... See full document
6
Novel Multiple Locus Variable Number Tandem Repeat Analysis Method for Rapid Molecular Typing of Human Staphylococcus aureus
... Pulsed-field gel electrophoresis (PFGE) is considered the gold standard method for the typing of Staphylococcus aureus isolates ...used typing schemes ... See full document
5
Staphylococcal Interspersed Repeat Unit Typing of Staphylococcus aureus: Evaluation of a New Multilocus Variable Number Tandem Repeat Analysis Typing Method
... interspersed repeat unit (SIRU) method applied to a diverse collection of 104 Staphylococcus aureus isolates previously characterized by pulsed-field gel ... See full document
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Comparison of Multiple Locus Variable Number Tandem Repeat Analysis with Pulsed Field Gel Electrophoresis Typing of Acinetobacter baumannii in China
... T09 isolates were different at only one locus (5 at Abaum_0845, 1 at Abaum_2396) ...VNTR locus TRs were capable of being altered in a relatively small number of generations, the stability of ... See full document
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Comparison of Two Multilocus Variable Number Tandem Repeat Methods and Pulsed Field Gel Electrophoresis for Differentiating Highly Clonal Methicillin Resistant Staphylococcus aureus Isolates
... the typing methods (the probability that similar clustering of isolates would be obtained with the different typing methods) for subtyping was low, with adjusted Rand indices values ranging from ... See full document
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Optimized Multilocus Variable Number Tandem Repeat Analysis Assay and Its Complementarity with Pulsed Field Gel Electrophoresis and Multilocus Sequence Typing for Listeria monocytogenes Clone Identification and Surveillance
... We compared MLVA-11 with the three widely used methods serotyping, PFGE, and MLST. While several MLST schemes have been published (9, 12, 47), only the Institut Pasteur scheme (12) provides a standardized nomenclature ... See full document
13
Comparison between Salmonella enterica Serotype Enteritidis Genotyping Methods and Phage Type
... among typing results collected by applying multilocus vari- able-number tandem-repeat analysis (MLVA), pulsed-field gel electrophoresis (PFGE), and ... See full document
11
Comparison of Multiple Locus Variable Number Tandem Repeat Analysis, Pulsed Field Gel Electrophoresis, and Phage Typing for Subtype Analysis of Salmonella enterica Serotype Enteritidis
... of isolates that were found to be associated with foreign ...of isolates identified from dendro- grams of PFGE restriction patterns also revealed a correlation with foreign travel, and while statistically ... See full document
8
Multiple Locus Variable Number Tandem Repeat Analysis for Typing of Staphylococcus epidermidis
... of Staphylococcus epidermidis is in- creasingly ...nosocomial isolates of ...rapid typing methods with high reproducibility. Since the 1990s, pulsed-field gel ... See full document
6
Comparison of the DiversiLab Repetitive Element PCR System with spa Typing and Pulsed Field Gel Electrophoresis for Clonal Characterization of Methicillin Resistant Staphylococcus aureus
... ever, typing methods have also become an indispensable tool for distinguishing clonal nosocomial clusters from unrelated increase of MRSA ...genetic typing methods for the clonal ... See full document
7
Molecular Epidemiology of Hospital Acquired Vancomycin Resistant Enterococci
... patients. Multiple-locus variable-number tandem repeat analysis (MLVA) has been validated recently by use of a global strain ...with multilocus sequence ... See full document
5
Comparison of Fingerprinting Methods for Typing Methicillin Resistant Staphylococcus aureus Sequence Type 398
... the multiple-locus variable-number tandem-repeat assay (MLVA) and pulsed-field gel electrophoresis (PFGE) when using restriction enzymes BstZI, SacII, ... See full document
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Comparison of Multilocus Sequence Typing, Pulsed Field Gel Electrophoresis, and Antimicrobial Susceptibility Typing for Characterization of Salmonella enterica Serotype Newport Isolates
... Although pulsed-field gel electrophoresis (PFGE) is the current “gold standard” typing method for Salmonella, multilocus sequence typing (MLST) may be more relevant ... See full document
9
Multilocus Sequence Typing Scheme versus Pulsed Field Gel Electrophoresis for Typing Mycobacterium abscessus Isolates
... bands, approximately 50 kb in length, corresponds to a plasmid that is absent in some isolates (39). Tenover et al. (40) and van Belkum et al. (26) stated that isolates differing by one to four PFGE bands ... See full document
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Improved Multiple Locus Variable Number Tandem Repeat Assay for Staphylococcus aureus Genotyping, Providing a Highly Informative Technique Together with Strong Phylogenetic Value
... of spa typing. VNTRs were previously used to genotype S. aureus in a method called multilocus variable-number tandem- repeat fingerprinting (MLVF) to reflect the ... See full document
8
Multilocus Sequence Typing Compared to Pulsed Field Gel Electrophoresis for Molecular Typing of Pseudomonas aeruginosa
... The isolates were assigned a sequence type (ST) number according to their allelic ...phylogenetic analysis, and isolates that were identical at five or more alleles were considered to ... See full document
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Utility of Multilocus Variable Number Tandem Repeat Analysis as a Molecular Tool for Phylogenetic Analysis of Shigella sonnei
... phylogenetic analysis of Yersinia pestis, a highly monomorphic pathogen; the MLVA data based on 25 VNTR markers could effectively separate panels of isolates of different biovars, and typing based on ... See full document
6
Typing of Campylobacter jejuni isolates from Dogs using Multilocus Sequence Typing and Pulsed Field Gel Electrophoresis
... the isolates typed as clonal complexes ST-45, ST-206, ST-508 and ...dog isolates 13 (ST-3613, pubMLST id 5297) and ...the sequence types only varied by one base change (22), indicating that ... See full document
20
Pulsed field gel electrophoresis as a replacement for bacteriophage typing of Staphylococcus aureus
... outbreak-related isolates submitted in pure culture on Trypti- case soy agar slants (or equivalent); (ii) all isolates must be sent in one shipment, since accurate interpretation requires that all ... See full document
5
Prospective Whole Genome Sequencing Enhances National Surveillance of Listeria monocytogenes
... a locus for a variant to be ...all isolates included in the analy- sis—and the accessory genome, which included all other nonconserved nucleotide ...Bayesian analysis of population structure ... See full document
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