[PDF] Top 20 Estimating the effective population size from temporal allele frequency changes in experimental evolution
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Estimating the effective population size from temporal allele frequency changes in experimental evolution
... outbred experimental populations are created by mixing a large number of inbred lines ...sired experimental conditions while keeping the census size of the population controlled through time ... See full document
35
Using Maximum Likelihood to Estimate Population Size From Temporal Changes in Allele Frequencies
... using temporal changes in allele frequencies to estimate the number of breeding individuals in a ...variance effective population ...that temporal allele frequency ... See full document
8
Empirical Bayes Procedure for Estimating Genetic Distance Between Populations and Effective Population Size
... for estimating overdispersion is estimate can occur due to large sampling variance, as to compare the variation of sample allele frequencies shown in the ayu studies, because of the small sample obtained ... See full document
18
Estimating Effective Population Size from Temporally Spaced Samples with a Novel, Efficient Maximum-Likelihood Algorithm
... in population genetics ...small allele fre- quency as they make use of the full distributional information of the Wright–Fisher ...modeling allele frequency in the ...indistinguishable ... See full document
9
Estimating Effective Population Size and Migration Rates From Genetic Samples Over Space and Time
... our temporal approach is that of the populations (see, ...of population structures the estimation of effective size, methods employing a and migration patterns, ...priori from rium ... See full document
18
How Old Is the Most Recent Ancestor of Two Copies of an Allele?
... an allele is the structure of the neighboring region of the genome, which we term the genomic background of the ...the changes in allele frequencies over time and developed by him in many articles in ... See full document
12
Maximum-Likelihood and Markov Chain Monte Carlo Approaches to Estimate Inbreeding and Effective Size From Allele Frequency Changes
... of effective sizes were computed with the simulated data set presented in Figure 6B but restricted to the simulated evolution of the population of 100 ...generations from the founder ... See full document
16
A generalized approach for estimating effective population size from temporal changes in allele frequency.
... If sampling is before reproduction (plan 11), the initial sample and the 2N, gametes representing the effective population size (and, hence, all future generations) can[r] ... See full document
13
A NEW METHOD FOR ESTIMATING THE EFFECTIVE POPULATION SIZE FROM ALLELE FREQUENCY CHANGES
... Esti- mates of effective population sizes and of the standard errors of the estimates are computed for data on two fly populations that have been discussed in earlier papers.. I[r] ... See full document
18
On the Distribution of Temporal Variations in Allele Frequency
... female effective from Drosophila ...842–854. population size of red drum (Sciaenops ocellatus) in the northern Williamson, ...estimate population size from temporal ... See full document
6
Likelihood-Based Estimation of the Effective Population Size Using Temporal Changes in Allele Frequencies: A Genealogical Approach
... It is interesting that increasing the number of alleles advantage of a posterior distribution is that it allows the in the samples by having more loci with rare alleles visualization of the information brought by the ... See full document
11
Cost Effective Discovery of Nucleotide Polymorphisms in Populations of an Allopolyploid Species Using Pool Seq
... result from hybridization of closely related taxa accompanied with whole-genome duplication, are rare in amniotes but frequent in fish and amphibians and common in plants [1] ...originating from the two ... See full document
16
Depauperate genetic variability detected in the American and European bison using genomic techniques
... neutral allele having an initial allele frequency of 1/2 occurs sooner than loss of polymorphism in a single species and has an expected time of ...neutral allele to undergo fixation within a ... See full document
7
Parallel compensatory evolution stabilizes plasmids across the parasitism-mutualism continuum
... parallel evolution at the operon, locus, and nucleotide levels both within and between treatments (Fig- ure 2A and Table ...parallel evolution: PFLU1661 (18 out of 32 clones locus parallelism; 4 out of 32 ... See full document
7
ANALYZING GENE-FREQUENCY DATA WHEN THE EFFECTIVE POPULATION SIZE IS FINITE
... the identical parent population, so that the estimates in the first generation are of the same gene frequency, then a more powerful approach for determining whether or not s[r] ... See full document
14
Redistribution of Gene Frequency and Changes of Genetic Variation Following a Bottleneck in Population Size
... bottlenecks (Lo ´ pez-Fanjul et al. 2002). Although over- dominance may be important in some situations in the maintenance of genetic variation and in causing inbreed- ing depression, it is unlikely to be common ... See full document
18
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.
... The method is somewhat more successful when it begins from a reasonable genealogy (data not shown). Genealogies from the short chains should not be used in the final es[r] ... See full document
10
Parallel Compensatory Evolution Stabilizes Plasmids across the Parasitism-Mutualism Continuum
... compensatory evolution can enhance plasmid stability within populations [7–15], the propensity for this to occur across the para- sitism-mutualism continuum is ...Compensatory evolution stabilized plasmids ... See full document
8
Inferring Epidemiological Dynamics with Bayesian Coalescent Inference: The Merits of Deterministic and Stochastic Models
... naturally from a branching process in which the branching events coincide with the transmission events in the CTMC and only those lineages ancestral to sampled removals are ...compartment size corresponding ... See full document
39
The Effective Size of a Subdivided Population
... identity due to coalescence in some particular genera- tion, T '. This is given by the probability of a coalescence in some deme k at time T ' , multiplied by the probability tha[r] ... See full document
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