[PDF] Top 20 Identification of conserved regulatory elements by comparative genome analysis
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Identification of conserved regulatory elements by comparative genome analysis
... are conserved (on average) at this evolutionary distance ...termed regulatory modules [19], which suggests that dis- tinct blocks of sequence are required for transcriptional reg- ...the analysis ... See full document
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Identification of Virulence Associated Properties by Comparative Genome Analysis of Streptococcus pneumoniae, S pseudopneumoniae, S mitis, Three S oralis Subspecies, and S infantis
... comprehensive genome comparisons carried out in our study identified signif- icant differences between strains, as reflected in the number of strain-specific CDS (107 to 273 among ...the genome of ...Our ... See full document
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Identification of transcriptional regulatory elements for Ntng1 and Ntng2 genes in mice
... Comparative genome analysis of the mouse Ntng1- and Ntng2-BAC sequences was performed using the VISTA browser ...[32]. Analysis of Ntng1 and Ntng2 loci covered the Ntng1-BAC (RP23-143P6) ... See full document
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Comparative analysis of the ATRX promoter and 5' regulatory region reveals conserved regulatory elements which are linked to roles in neurodevelopment, alpha globin regulation and testicular function
... 5’ regulatory region to that of an evolutionarily divergent range of species, input sequences were retrieved with BLAT searches [58] at the UCSC Genome Browser ...whole genome shotgun databases, ... See full document
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Identification and functional characterization of microRNA regulatory elements in Brassicaceae
... First, ~22-nt small RNA transcript should be confirmed by blot hybridization to a size-fractionated RNA sample. Quantitative real-time PCR ( qRT-PCR), primer extension analysis, ribonuclease protection assay and ... See full document
142
Identification of an effective siRNA target site and functional regulatory elements, within the hepatitis B virus posttranscriptional regulatory element
... and nuclease-free water to a final volume of 10 μ L. The real-time PCR assay was carried out in a Rotor Gene RG-3000 (Corbett Research, Australia) under the follow- ing conditions: initial denaturing step at 95°C for 10 ... See full document
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Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to Borrelia burgdorferi Sensu Lato
... of regulatory IGS ...functional elements contributing to the evolutionary conservation of IGSs, we tested for the presence of ribosome-binding sites (RBS), promoters, intrinsic transcription terminators, ... See full document
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Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians
... their regulatory networks, genome-level information on ...draft genome from only second-generation sequencing data, made pos- sible by overcoming heterogenesis by using a newly devel- oped assembly ... See full document
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Identification of Cis-regulatory Elements in the Mouse Pax9/Nkx2-9 Genomic Region: Implication for Evolutionary Conserved Synteny
... the genome in the events of shuf- other linked genes that have maintained their physical fling and reorganization during evolution has been inev- association from the primitive situation predating the itably ... See full document
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Identification of regulatory elements in the Isl1 gene locus
... positive regulatory – ...potential regulatory elements (Pennacchio and Rubin, 2001; Pennacchio et ...DNA elements across the genome by functional ... See full document
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Comparative vertebrate genomic sequence analysis studies based on Fugu rubripes
... sequence only contains FGF2. A Fugu cosmid was sequenced to 99.99% accuracy and is shown to contain orthologues to SPAF, FGF2, NUDT4 and a Centrin gene, as well as a novel gene prediction (vader), evolutionarily ... See full document
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Identification of regulatory elements in the CD8 gene locus.
... utational analysis of a m otif sim ilar to the cyclic AMP response element (CRE) showed it to be necessary for the func tion of the prom oter in a transfected Jurkat cell ...ly conserved b etw een the hum ... See full document
340
Minor change, major difference: divergent functions of highly conserved cis regulatory elements subsequent to whole genome duplication events
... whole genome duplication (WGD) ...cis-regulatory elements. Functional analysis of the PAX2/5/8 gene subfamily appears to support at least the first part of this ...vertebrates. ... See full document
6
Whole Genome Sequence and Comparative Genomics Analysis of Multi drug Resistant Environmental Staphylococcus epidermidis ST59
... the conserved chromosomal copy of czcD gene, and was previously identified on a number of CoNS ...chromosomally. Elements carrying tetK and qacC matched previously reported ...1 Comparative general ... See full document
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Comparative analysis of regulatory elements of the Myf-5 gene
... contained regulatory elements involved in controlling the ventral expression domain of Myf-5 in the somites (see ...of regulatory sites. To facilitate the identification of putative ... See full document
205
Genome wide identification of enhancer elements
... to regulatory elements stabilize a bend in the DNA that enables them to physically contact the basal promoter region (Levine et ...the regulatory elements responsible for transcription (or ... See full document
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Identification of Long-Range Regulatory Elements in the Human Genome
... our analysis is unique when compared to three other studies that were recently ...human genome (GATA1/GATA2 target ...a genome-wide analysis (Sanyal et ... See full document
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Genome wide identification of regulatory elements in Sertoli cells
... Fig. 1. DNaseI-seq and RNA-seq analysis of Sertoli cells. (A) Overview of sex determination. At the bipotential stage (E11.5), XX and XY gonads are indistinguishable and contain a mixture of somatic and germ cells ... See full document
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Genome wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus
... small regulatory or small RNAs (sRNAs) have been identified, yet this class of molecule remains poorly understood and severely ...from genome annotation files, and as a consequence, their existence is often ... See full document
13
Genome-wide identification and comparative analysis of coiled-coil proteins
... Smith-Waterman analysis was accomplished with the TimeLogic De- Cypher system using the blossum62 scoring ...and elements from the ExtractProp software ... See full document
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