[PDF] Top 20 Using Maximum Likelihood to Estimate Population Size From Temporal Changes in Allele Frequencies
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Using Maximum Likelihood to Estimate Population Size From Temporal Changes in Allele Frequencies
... haploid size 100 were drawn with replacement. Runs were each locus from a uniform distribution. The simulated discarded if either estimate of population size was . 500. The populations ... See full document
8
Inbreeding of Bottlenecked Butterfly Populations: Estimation Using the Likelihood of Changes in Marker Allele Frequencies
... deviations from rate (n 1 1 2 c)(n 2 c)/2, where c is the number of events Hardy-Weinberg equilibrium were tested at each locus by gen- that have already ...constant population size of N over t ... See full document
11
Estimating Effective Population Size from Temporally Spaced Samples with a Novel, Efficient Maximum-Likelihood Algorithm
... sample size of n diploid individuals (a total of 2n alleles), as described in Equation ...Initial allele frequencies were drawn from the uniform distri- ...the likelihood function was ... See full document
9
Estimating the effective population size from temporal allele frequency changes in experimental evolution
... estimating allele frequencies and inferring population genetic parameters under several conditions (Futschik and Schlötterer 2010; Zhu et ...many population genetic estimators have been ... See full document
35
Demographic Genetics of Brown Trout (Salmo trutta) and Estimation of Effective Population Size From Temporal Change of Allele Frequencies
... We studied temporal allele frequency shifts over 15 years and estimated the genetically effective size of four natural populations of brown trout (Salmo trutta L.) on the bas[r] ... See full document
13
On the Distribution of Temporal Variations in Allele Frequency
... effective from Drosophila melanogaster. Mol. Biol. Evol. 10: 842–854. population size of red drum (Sciaenops ocellatus) in the northern Williamson, ...1999 Using maximum likeli- Gulf of ... See full document
6
Maximum-Likelihood and Markov Chain Monte Carlo Approaches to Estimate Inbreeding and Effective Size From Allele Frequency Changes
... a population of 25 individuals evolving during four F-statistics, it can be used even with polymorphic mark- generations in which samples of 50 individuals were ers (haplotypes or ...founder frequencies ... See full document
16
Challenges in estimating insecticide selection pressures from mosquito field data.
... initial frequencies, as a means to predict the rate of spread of resistance in natural ...data using maximum likelihood (ML) ...and temporal heterogeneity ...and temporal ... See full document
11
Evidence of temporal stability in allelic and mitochondrial haplotype diversity in populations of Glossina fuscipes fuscipes (Diptera: Glossinidae) in northern Uganda
... season from sites where they were previously abundant [18], which can cause seasonal bottlenecks and thereby result in large temporal changes in gene frequencies due to genetic ...stabilize ... See full document
12
A high throughput method for quantifying alleles and haplotypes of the malaria vaccine candidate Plasmodium falciparum merozoite surface protein 1 19 kDa
... to estimate haplotype frequencies in diploid human populations [20,21] and in pooled human DNA ...uses maximum likelihood meth- ods to determine the most probable haplotype assign- ment given ... See full document
10
Likelihood-Based Estimation of the Effective Population Size Using Temporal Changes in Allele Frequencies: A Genealogical Approach
... We sincerely thank P. England for the Drosophila data, S. Scho¨nhuth for the killifish data, J. Dallas for the otter data, and C. Spencer for the mosquito fish data. Many thanks to E. Anderson, M. Schwartz, L. Excof- ... See full document
11
Estimating Effective Population Size and Migration Rates From Genetic Samples Over Space and Time
... and estimate different genetic properties Another advantage of our temporal approach is that of the populations (see, ...of population structures the estimation of effective size, methods ... See full document
18
Quasi Maximum Likelihood Analysis of High Dimensional Constrained Factor Models
... the maximum likelihood (ML) method and prove the average consistency of the maximum likelihood estimates ...indeterminacy from asymptotics and give limiting distributions of the ... See full document
93
Allele Frequency-Based Analyses Robustly Map Sequence Sites Under Balancing Selection in a Malaria Vaccine Candidate Antigen
... Analyses are shown for the whole region sequenced (codons 148–582), domain I (codons 149–302), domain II (codons 320–418), and domain III (codons 443–509). Seven polymorphic sites lie outside the three domains. Three ... See full document
8
Approximate maximum likelihood estimation for population genetic inference
... many population genetic problems, parameter estimation is obstructed by an intractable likelihood ...mum likelihood estimate, given a set of observed summary ...much from ... See full document
22
Self-reported race/ethnicity in the age of genomic research: its potential impact on understanding health disparities
... Public Population Project in Genomics (P3G) ...of population genomics to ensure public access to population genomic ...missing from the ...DNA from ancestral populations, ancestry ... See full document
15
NATURAL SELECTION VS. RANDOM DRIFT: EVIDENCE FROM TEMPORAL VARIATION IN ALLELE FREQUENCIES IN NATURE
... is less than our actual sample size. We have little information on which to base this approxi- mation. Table 3 shows some relevant results from these experiments. [r] ... See full document
38
A measure of population subdivision based on microsatellite allele frequencies.
... The difference in average coalescence times is sufficiently short that the values of hT obtained depend on the occurrence of relatively few mutations, even with the la[r] ... See full document
6
Estimating the Total Number of Alleles Using a Sample Coverage Method
... increasing size case, the parameter ⫽ 4N is selected to be {10, 5, ...3. From the third col- tend to increase the ...increases size change reaches its maximum when P ⫽ ... See full document
9
Cluster Analysis of Temporal Data using Maximum Likelihood Estimation
... Temporal databases provide support for time evolving data. Data clustering is one of the most effective mechanisms to improve performance of database system. In [3], a new measure called “temporal Affinity” ... See full document
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