[PDF] Top 20 Multilocus Sequence Typing of Total Genome Sequenced Bacteria
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Multilocus Sequence Typing of Total Genome Sequenced Bacteria
... short sequence reads, along with the sequencing platforms ...were sequenced on the Illumina platform generating paired-end reads by TGen (United ...were sequenced on the Illumina platform generating ... See full document
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Core Genome Multilocus Sequence Typing: a Standardized Approach for Molecular Typing of Mycoplasma gallisepticum
... were sequenced during the current study, including several reference and vaccine isolates, six isolates from Israel collected between 1999 and 2001, eight isolates from the United Kingdom, 12 isolates from North ... See full document
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Multilocus Sequence Typing for Characterization of Staphylococcus pseudintermedius
... University, Genome Technology Core [Illumina technol- ogy] and the University of Florida Interdisciplinary Center for Biotechnology Research [Roche 454 technology]), with genomic DNA isolated from ...aureus ... See full document
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Core Genome Multilocus Sequence Typing Scheme for High Resolution Typing of Enterococcus faecium
... were sequenced lo- cally using Illumina MiSeq paired-end read technology, generating reads of 150, 250, or 300 bp in ...the total sequencing depth (see Table S2 in the supplemental material for ... See full document
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Multilocus Sequence Typing of Pathogenic Candida Species
... bases sequenced for ...bases sequenced were ...genes sequenced for MLST also points to an evolu- tionary origin more recent than that for ...genes sequenced were likely to be highly conserved ... See full document
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Hash Based Core Genome Multilocus Sequence Typing for Clostridium difficile
... new sequence generated with millions of previ- ous ...each genome produced a roughly 130-kb JSON file, which is readily exchangeable between laboratories and could potentially be hosted alongside raw reads ... See full document
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Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome Wide Typing of Clostridium difficile
... novel typing approaches, backward comparability with previous typing methods and a high level of typeability, ...used typing method for ...and sequenced them to achieve highest sequence ... See full document
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Phylogenetic Analysis of Mycobacterium tuberculosis Strains in Wales by Use of Core Genome Multilocus Sequence Typing To Analyze Whole Genome Sequencing Data
... isolate sequence was aligned to the Ridom SeqSphere M. tuberculosis core genome MLST (cgMLST) scheme of 2,891 core genes (GenBank accession number ...the sequenced Welsh isolates and 179 isolates ... See full document
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Multilocus Sequence Typing Scheme for Enterococcus faecium
... (glucose-6-phosphate dehydrogenase), purK (phosphoribosylaminoimidazol car- boxylase ATPase subunit), and pstS (phosphate ATP-binding cassette transport- er). Fragments were amplified from bacterial lysates by PCR with ... See full document
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Culture of Clinical Specimens Reveals Extensive Diversity of Legionella pneumophila Strains in Arizona
... a total of 236 Legionella species isolates from Arizona were submitted to the CDC for reference ...(8.9%). Genome sequencing was conducted on 113 ...Whole-genome multilocus sequence ... See full document
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Multilocus Sequence Typing System forCampylobacter jejuni
... Choice of loci. A number of candidate loci, encoding enzymes responsible for intermediary metabolism, were identified by searching the C. jejuni genome database (http:www.sanger.ac.uk/Projects/C_jejuni/) (26) with ... See full document
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Multilocus Sequence Typing of Mycobacterium xenopi
... electrophoresis-based typing methods, suffers from poor interlab reproducibility and portabil- ...contrast, multilocus sequence typing (MLST) is readily por- table and ... See full document
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Multilocus sequence typing breathes life into a microbial metagenome
... nucleotide sequence-based genetic typing method, multilocus sequence typing, we were able for the first time to match clonal cultivable isolates to a published and controversial ... See full document
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Whole Genome Multilocus Sequence Typing of Extended Spectrum Beta Lactamase Producing Enterobacteriaceae
... Molecular typing has become an important tool in infection control, as it enables the detection of nosocomial trans- mission of bacterial pathogens and the identification of sources and routes of transmission in ... See full document
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Multilocus Sequence Typing System for Group B Streptococcus
... the genome sequence of the GBS strain NEM316 (11) with homologous sequences from other ...and sequence diversity observed in pilot studies with a restricted set of GBS ... See full document
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Multilocus Sequence Typing of the Porcine and Human Gastric Pathogen Helicobacter suis
... a total of 4,084 bp were aligned to the same gene regions of ...In total, 48 nucleotide sites (48/4,084; ...a total of 27 variable nucleotide sites, whereas 7, 4, 3, 3, 2, and 2 variable nucleotide ... See full document
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Epidemiological Typing of Serratia marcescens Isolates by Whole Genome Multilocus Sequence Typing
... high-resolution typing needs optimal epidemiological data and cannot stand on its ...genomic typing of S. marcescens will have wider implications, as these bacteria infect other risk groups as well ... See full document
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Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole Genome Sequence Based Typing of Listeria monocytogenes
... MLST and cgMLST both use alleles and not nucleotide poly- morphisms as units of comparison. Irrespective of the number of nucleotide polymorphisms involved, each allelic change is num- bered as a single event; i.e., an ... See full document
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Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus
... locus sequence typing (MLST) database for ...core genome MLST (cgMLST) analysis as one of the most straightforward ways to explore complex genomic data in an epidemiological con- ...We ... See full document
16
Multilocus Sequence Typing of Mycoplasma hyorhinis Strains Identified by a Real Time TaqMan PCR Assay
... fully sequenced strains were typed by two portable typing methods, the sequencing of the p37 gene and a multilocus sequence typing (MLST) ...the sequenced genomes of the ...In ... See full document
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