[PDF] Top 20 Use of Multilocus Variable Number Tandem Repeat Analysis for Typing Mycobacterium avium subsp paratuberculosis
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Use of Multilocus Variable Number Tandem Repeat Analysis for Typing Mycobacterium avium subsp paratuberculosis
... MLVA typing compared to the different RFLP ...MLVA typing by calculating the diversity index gives an idea about the discriminative value of these ...the number of different types assigned to ... See full document
7
Staphylococcal Interspersed Repeat Unit Typing of Staphylococcus aureus: Evaluation of a New Multilocus Variable Number Tandem Repeat Analysis Typing Method
... contain variable repeated units among strains (43, ...a multilocus variable-number tandem-repeat (VNTR) analysis (MLVA) have been used extensively for typ- ing of clinical ... See full document
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Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement
... the number of tandem repeats. The number of tandem repeats at each locus was manually determined using Genetyx version ...the tandem array were imported into BioNumerics version ... See full document
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Multilocus Variable Number Tandem Repeat Analysis Scheme for Chlamydia felis Genotyping: Comparison with Multilocus Sequence Typing
... coding tandem repeats identified in two putative proteins (CF0611 and CF0618) and the deletion in the hctB gene (CF0595) is ...Coding tandem repeats are believed to enhance spe- cific properties of ... See full document
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Application of Multilocus Variable Number Tandem Repeat Analysis for Molecular Typing of the Agent of Leptospirosis
... molecular typing systems based on variable-number tandem-repeat (VNTR) analysis have been described and have been used to identify Leptospira interrogans ...extend ... See full document
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Multilocus Variable Number Tandem Repeat Analysis for Molecular Typing of Shigella sonnei
... size analysis, the fluorescent amplicons were diluted in water in a 1:10 (M7) or 1:100 (M1 to M6) ratio, and 1 l of the solution was then transferred into 10 l ...(catalog number 4322682; Applied ...data ... See full document
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New Variable Number Tandem Repeat Markers for Typing Mycobacterium avium subsp paratuberculosis and M avium Strains: Comparison with IS900 and IS1245 Restriction Fragment Length Polymorphism Typing
... M. avium subsp. paratuber- culosis and M. avium populations has shown the very close relatedness, as well as the distinctiveness, of these mycobacte- rial species ...to use the same PCR ... See full document
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Utility of Whole Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance
... 8,721 variable sites in the core genome were identified among the 105 isolates; 47% of the single nucleotide polymorphisms (SNPs) were attributable to six “atypical” ...with multilocus ... See full document
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Evaluation of a Multilocus Variable Number Tandem Repeat Analysis Scheme for Typing Human Brucella Isolates in a Region of Brucellosis Endemicity
... Minisatellite repeat numbers (panel 1 [loci bruce06, bruce08, bruce11, bruce12, bruce42, bruce43, bruce45, and bruce55]) and mic- rosatellite repeat numbers (panel 2A [loci bruce18, bruce19, and bruce21] ... See full document
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Multilocus Variable Number Tandem Repeat Analysis and Multilocus Sequence Typing Reveal Genetic Relationships among Clostridium difficile Isolates Genotyped by Restriction Endonuclease Analysis
... the tandem-repeat loci used in this analysis are sufficiently stable to reveal phylogenetic associations that could not be discerned by either MLST or ...highly variable, and can achieve high ... See full document
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Multilocus Variable Number Tandem Repeat Analysis for Investigation of Clostridium difficile Transmission in Hospitals
... identification. Tandem Repeats Finder software was used to detect repeat elements in the ...ftp://ftp.sanger.ac.uk/pub/pathogens/cd/. Tandem repeats with a period size of ⱕ 20 bp (to facilitate ... See full document
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Selection and Validation of a Multilocus Variable Number Tandem Repeat Analysis Panel for Typing Shigella spp
... molecular typing methods, such as ribotyping (5), plasmid profile analysis, re- striction fragment length polymorphism (25, 26), and pulsed- field gel electrophoresis (PFGE) (37), has greatly improved the ... See full document
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Variable Number Tandem Repeat Analysis of Respiratory and Household Water Biofilm Isolates of “Mycobacterium avium subsp hominissuis” with Establishment of a PCR Database
... M. avium have been ...M. avium subsp. avium, ...M. avium subsp. paratuberculosis, and ...M. avium subsp. avium but is not present in isolates of ...M. ... See full document
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Multilocus Variable Number Tandem Repeat Method for Typing Salmonella enterica Serovar Newport
... To avoid overlap in combinations of fragment sizes and dye colors, two separate triplex reactions were conducted using an iCycler thermal cycler (Bio-Rad, Hercules, CA) in 25- l vol- umes (Table 1). All primers were ... See full document
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High Genetic Diversity among Mycobacterium avium subsp paratuberculosis Strains from German Cattle Herds Shown by Combination of IS900 Restriction Fragment Length Polymorphism Analysis and Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Typing
... Mycobacterium avium subsp. paratuberculosis is the etiologic agent of Johne’s disease and is endemic to the national cattle herds of many ...M. avium subsp. ... See full document
10
Comparison of Variable-Number Tandem-Repeat Markers typing and IS1245 Restriction Fragment Length Polymorphism fingerprinting of Mycobacterium avium subsp. hominissuis from human and porcine origins
... the use of IS1311RFLP with IS1245RFLP and concluded that IS1245 yielded higher discriminatory index, whereas IS1311 is easier to ...M. avium isolates are stable when cultured in vitro but less stable when ... See full document
6
Rapid Detection and Typing of Strains of Mycobacterium avium subsp paratuberculosis from Broth Cultures
... M. avium subsp. paratuberculosis subtype (7g-4ggt) in cattle herds in Ohio as well as the existence of multiple sub- types of ...M. avium subsp. paratuberculosis on three of the ... See full document
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Genetic Structure of SSR1 & SSR2 loci from Iranian Mycobacterium Avium Subspecies Paratuberculosis Isolates by a Short Sequence Repeat Analysis Approach
... like Variable Number Tandem Repeat (VNTR) and Short Sequence Repeat (SSR) ...nucleotide repeat unit structures that were found to be polymorphic within MAP isolates ...SSR ... See full document
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Comparison of a Variable Number Tandem Repeat (VNTR) Method for Typing Mycobacterium avium with Mycobacterial Interspersed Repetitive Unit VNTR and IS1245 Restriction Fragment Length Polymorphism Typing
... MIRU-VNTR typing analysis (see Table S1 in the supplemental ...M. avium subsp. paratuberculosis (ATCC 19698), for which the number of rep- etitions of each VNTR locus had been ... See full document
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Multilocus Variable Number Tandem Repeat Typing of Mycobacterium ulcerans
... VNTR analysis could discriminate between the isolates from French Guyana and Surinam by two loci, in contrast to IS2404 RFLP results (5) and AFLP results ...MLST analysis (21), was much greater (at seven ... See full document
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