[PDF] Top 20 Typing and Subtyping of Clostridium difficile Isolates by Using Multiple Locus Variable Number Tandem Repeat Analysis
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Typing and Subtyping of Clostridium difficile Isolates by Using Multiple Locus Variable Number Tandem Repeat Analysis
... analyzed using multicolored capillary electrophoresis on an ABI3100 genetic analyzer, with a ROX500 marker as an internal marker for each ...selected number of isolates were sequenced to verify ... See full document
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Comparison of Two Multiple Locus Variable Number Tandem Repeat Analysis Methods for Molecular Strain Typing of Human Brucella melitensis Isolates from the Middle East
... molecular typing methods are useful for identifying Brucella isolates and determining species and biovar designations; however, they have limited value for epidemiological trace-back investiga- tions (6, ... See full document
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Development of Multiple Locus Variable Number Tandem Repeat Analysis for Molecular Typing of Mycoplasma pneumoniae
... PCR-RFLP analysis can, and can subdivide group 2 into two subgroups, subgroups 2a and 2b ...molecular typing (4). Among the new geno- typing methods, multiple-locus ... See full document
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Multiple Locus Variable Number Tandem Repeat Analysis as a Tool for Subtyping Listeria monocytogenes Strains
... small repeat units of 6 bp to 15 ...Cluster analysis of 31 ...3b isolates. Symbols next to isolate names indicate similar isolates in MLVA and PFGE ...If isolates have indistinguishable ... See full document
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Strain Typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by Using Multiple Locus Variable Number Tandem Repeat Analysis
... 10 variable-number tandem repeat (VNTR) loci present within the genome of Borrelia burgdorferi and subsequently developed a multiple-locus VNTR analysis (MLVA) ... See full document
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Development and validation of a multiple locus variable number tandem repeat analysis (MLVA) scheme for Fusobacterium necrophorum
... Strain typing of ...develop multiple locus variable number tandem repeat analysis (MLVA) as a strain typing technique for ...both isolates and mixed ... See full document
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Multiple Locus Variable Number Tandem Repeat Analysis of Salmonella enterica Serovar Typhi
... Multilocus variable-number tandem repeats (VNTRs) are widely used as molecular markers to differ- entiate isolates of homogenous pathogenic ...Typhi isolates. A total of 70 multilocus ... See full document
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Variable Number of Tandem Repeats in Salmonella enterica subsp enterica for Typing Purposes
... potential variable number tandem repeats (VNTRs). A multiple- locus VNTR analysis (MLVA) of 99 strains of ...human isolates from France and did not reflect isolates ... See full document
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Multiple Locus Variable Number Tandem Repeat Analysis, a Novel Typing Scheme To Study the Genetic Relatedness and Epidemiology of Enterococcus faecium Isolates
... tify isolates that belong to the MLST-C1 ...VNTR locus, VNTR-7, yielded the same sensitiv- ity (97%) in identifying genotypes belonging to MLST-C1 as the complete MLVA profile, yet specificity and PPV were ... See full document
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Evaluating the impacts of stressors of Pseudomonas syringae pathovar tomato on the effectiveness of multi-locus variable number tandem repeat analysis and multi-locus sequence typing in microbial forensic investigations
... in repeat copy number between strains of a single microbial species ...copy number is often exploited for strain differentiation using MLVA ...MLVA typing involves PCR amplification of ... See full document
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Multiple locus variable number tandem repeat analysis (MLVA) genotyping of human Brucella isolates in Malaysia
... Data indicated in the dendrogram: Strain name in the laboratory Strain, complete panels MLVA16 genotypes in this article MLVA type, genotypes corresponding to each isolate in the Brucell[r] ... See full document
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Multiple Locus Variable Number Tandem Repeat Analysis Genotyping of Human Brucella Isolates from Turkey
... 11 isolates from an epidemiologically linked ...two isolates, and genotype 29 was shared by three ...Two isolates (genotype 21, BRU-S082; genotype 30, BRU-S083) obtained from family members who did ... See full document
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Comparison of Multiple Locus Variable Number Tandem Repeat Analysis with Pulsed Field Gel Electrophoresis Typing of Acinetobacter baumannii in China
... 1 Typing concordance between MLVA-7 and PFGE ...Cluster analysis of 122 ...comparison. Isolates isolated during the outbreak are marked by “BJ” in the first two letters of the strain ...equipment ... See full document
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Mycobacterium bovis population structure in cattle and local badgers: co-localisation and variation by farm type
... includes Multiple-Locus Variable number tandem repeat Analysis (MLVA) to determine the Mycobacterium bovis genetic type present in both cattle, and the predominant ... See full document
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Comparison of Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Investigation of Clostridium difficile Transmission
... all isolates were from the highly prevalent epidemic C. difficile ribotype 027 ...that isolates ⱕ 2 STRDs apart should be regarded as indistinguish- ...recent analysis of 117 recurrent ... See full document
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Comparison of Multilocus Variable Number Tandem Repeat Analysis and Whole Genome Sequencing for Investigation of Clostridium difficile Transmission
... all isolates were from the highly prevalent epidemic C. difficile ribotype 027 ...that isolates ⱕ 2 STRDs apart should be regarded as indistinguish- ...recent analysis of 117 recurrent ... See full document
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Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement
... SE-8) using previously designed primers ...the number of tandem repeats. The number of tandem repeats at each locus was manually determined using Genetyx version ...the ... See full document
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Multilocus Variable Number Tandem Repeat Analysis and Multilocus Sequence Typing Reveal Genetic Relationships among Clostridium difficile Isolates Genotyped by Restriction Endonuclease Analysis
... Y1p isolates generated stable alleles for CDR5, CDR48, and CDR60 over the 12-year period ...J9 isolates, instability at CDR4 and CDR49 was ...Y4 isolates col- lected over 13 ...of isolates. ... See full document
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Polymorphism of Variable Number Tandem Repeats at Multiple Loci in Mycobacterium tuberculosis
... VNTR analysis of M. tuberculosis. Each VNTR locus was separately amplified by a pair of primers specific for the flank- ing regions of the ...exact tandem repeats (ETR) as previously described ...the ... See full document
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Improved Multiple Locus Variable Number Tandem Repeat Assay for Staphylococcus aureus Genotyping, Providing a Highly Informative Technique Together with Strong Phylogenetic Value
... clustering analysis based upon the categor- ical distance coefficient and unweighted pair group method with arithmetic mean clustering ...spa typing together with the algorithm Based Upon Repeat ... See full document
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