Sequence typing
Multilocus sequence typing breathes life into a microbial metagenome
... nucleotide sequence-based genetic typing method, multilocus sequence typing, we were able for the first time to match clonal cultivable isolates to a published and controversial bacterial ...
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Development of a Multilocus Sequence Typing Scheme for Molecular Typing of Mycoplasma pneumoniae
... multilocus sequence typing (MLST) scheme for ...12 sequence types (STs) re- sulted for 57 ...genomic sequence analysis, indicating that the MLST scheme developed in this study is ...
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Multiplex Strategy for Multilocus Sequence Typing, fla Typing, and Genetic Determination of Antimicrobial Resistance of Campylobacter jejuni and Campylobacter coli Isolates Collected in Switzerland
... Campylobacter typing by applying various, mostly ge- netic, methods is used for this ...flaA typing based on the restriction analysis of PCR-amplified fragments or sequencing of the flagellin-encod- ing ...
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Estimating Recombinational Parameters in Streptococcus pneumoniae From Multilocus Sequence Typing Data
... Multilocus sequence typing (MLST) is a highly discriminatory molecular typing method that defines isolates of bacterial pathogens using the sequences of ⵑ450-bp internal fragments of seven ...
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Multilocus Sequence Typing of Clostridium difficile
... Geno- typing methods in common use for ...Multilocus sequence typing (MLST) is a microbial genotyping method facilitating isolate discrimination using nu- cleotide sequences of housekeeping gene ...
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Multilocus Sequence Typing of Mycoplasma hyorhinis Strains Identified by a Real Time TaqMan PCR Assay
... portable typing methods, the sequencing of the p37 gene and a multilocus sequence typing (MLST) ...of sequence was analyzed for each ...interpreting typing results with confidence (D ⴝ ...
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Multilocus Sequence Typing System forCampylobacter jejuni
... multilocus sequence typing (MLST) system for this organism is described, which exploits the genetic variation present in seven housekeeping loci to determine the genetic relationships among ...or ...
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High Resolution Typing of Leptospira interrogans Strains by Multispacer Sequence Typing
... multispacer sequence typing (MST) method for genotyping strains belonging to the species Leptospira interrogans, which is the main agent of leptospirosis ...
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Comparison of Single and Multilocus Sequence Typing and Toxin Gene Profiling for Characterization of Methicillin Resistant Staphylococcus aureus
... Different typing methods provide different information. Multilocus sequence typing (MLST) reveals slowly accumulating changes in conserved genes that reflect long- term evolutionary changes and can ...
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Analysis of Emergence of Quinolone Resistant Gonococci in Greece by Combined Use of Neisseria gonorrhoeae Multiantigen Sequence Typing and Multilocus Sequence Typing
... Molecular typing can be used to explore the basis of the emergence of QRNG strains, and several methods have been used for typing gonococci (6, 9, ...years, sequence-based methods have been fa- vored ...
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A Trilocus Sequence Typing Scheme for Hospital Epidemiology and Subspecies Differentiation of an Important Nosocomial Pathogen, Enterococcus faecalis
... trilocus sequence typing (TLST) scheme based on intragenic regions of two antigenic genes, ace and salA (encoding a collagen/laminin adhesin and a cell wall-associated antigen, respec- tively), and a gene ...
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Multilocus Sequence Typing for Characterization of Staphylococcus pseudintermedius
... Multilocus sequence typing (MLST) has been used extensively to define the population genetic structure of Staphylococcus aureus and other bacterial spe- ...the sequence variation of housekeeping ...
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Epidemiological Typing of Serratia marcescens Isolates by Whole Genome Multilocus Sequence Typing
... T he new gold standard in microbial epidemiology is genome sequencing. The use of whole-genome (draft) sequences (WGS) to compare bacterial isolates in detail, and to delineate their spread, is based on either the ...
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Multilocus Sequence Typing Scheme for Enterococcus faecium
... A multilocus sequence typing (MLST) scheme has been developed for Enterococcus faecium. Internal frag- ments from seven housekeeping genes of 123 epidemiologically unlinked isolates from humans and ...
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Molecular Typing of Selected Enterococcus faecalis Isolates: Pilot Study Using Multilocus Sequence Typing and Pulsed Field Gel Electrophoresis
... multilocus sequence typing (MLST) approach with a well-established molecular typing technique, pulsed-field gel electrophoresis (PFGE), for subspecies differen- tiation of Enterococcus faecalis ...
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Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole Genome Sequence Based Typing of Listeria monocytogenes
... ultimate typing tool to characterize Listeria monocytogenes out- ...monocytogenes typing scheme based on genome-wide gene-by- gene comparisons (core genome multilocus the sequence typing ...
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Multilocus Sequence Typing of Mycobacterium xenopi
... electrophoresis-based typing methods, suffers from poor interlab reproducibility and portabil- ...multilocus sequence typing (MLST) is readily por- table and ...
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Core Genome Multilocus Sequence Typing Scheme for High Resolution Typing of Enterococcus faecium
... multilocus sequence typing (MLST) has been used to study the molecular epidemiology of ...same sequence type (ST), which denotes the higher discriminatory power of this cgMLST scheme over that of ...
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Core Genome Multilocus Sequence Typing: a Standardized Approach for Molecular Typing of Mycoplasma gallisepticum
... multilocus sequence typing approach (cgMLST) was pro- posed as a standard reproducible method for WGS-based strain differentiation and epidemiological ...the typing results between different ...
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Multilocus Sequence Typing System for Group B Streptococcus
... multilocus sequence typing (MLST) system was developed for group B streptococcus ...or sequence type (ST) for each ...valuable typing tool that will promote further investigation of the ...
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