[PDF] Top 20 Linkage analysis using principal components of gene expression data
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Linkage analysis using principal components of gene expression data
... The principal components results represent values at the same relative region as those found using the two other methods (single probe, Morley et ...the principal component that was used to ... See full document
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Impact of normalization and filtering on linkage analysis of gene expression data
... 1 data set provided for GAW15 and carried out expression quantitative trait linkage (eQTL) analysis for 3554 ...genetic analysis of gene expression ...Our linkage ... See full document
5
The multiplicity problem in linkage analysis of gene expression data – the power of differentiating cis and trans acting regulators
... method [2] was chosen for this analysis because the prior information required is rather general and does not need any distribution assumptions. Sun et al. [2] investigated the performance of the method under two ... See full document
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Semiparametric methods for genome wide linkage analysis of human gene expression data
... The gene expression data provided to GAW15 include 14 three-generation CEPH (Centre d'Etude du Polymor- phisme Humain) Utah families, each of which consists of 13 or 14 ...genome-wide linkage ... See full document
6
Genetic and Nongenetic Variation Revealed for the Principal Components of Human Gene Expression
... the data set, they also have the power to detect gene regulatory networks and coexpressed modules (Holter et ...2000). Gene regulatory networks have a considerable impact on disease as opposed to ... See full document
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Linkage and association analyses of principal components in expression data
... of expression phenotypes and then perform link- age analysis on the component ...sibling analysis in [1], we only used phenotypes from the sets of siblings in the third ...PCA using those 14 ... See full document
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vivo models of dietary-induced atherosclerosis at
... 2. Principal Component Analysis of gene expression ...data. Principal components were calculated by singular-value ...7 gene expression ... See full document
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Artificial neural networks for linkage analysis of quantitative gene expression phenotypes and evaluation of gene × gene interactions
... updated using Map 2; we report the latter results, and describe some contrasts with Map 1 results in the Discus- ...pairs using Merlin. IBD sharing at 10-cM gridpoints was presented as input data to ... See full document
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Principal Components Analysis with Spline Optimal Transformations for Continuous Data
... [2] using a function from the original m-dimensional space onto an arbitrarily high-dimensional space (known as feature space in the machine learning community) which “automatically” carries out the nonlinear ... See full document
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Combining least absolute shrinkage and selection operator (LASSO) and principal components analysis for detection of gene gene interactions in genome wide association studies
... uses principal-component analysis (PCA) and least absolute shrinkage and selection operator (LASSO) to identify gene-gene interaction in genome-wide association ...each gene. The ... See full document
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Recursive Principal Components Analysis Using Eigenvector Matrix Perturbation
... the data is generated by a colored time series us- ing a time-delay line (making the procedure a temporal PCA case ...colored using a two-pole filter whose poles are selected from a random uniform distri- ... See full document
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Cancer Data Classification Using Clustering Techniques
... component analysis has been applied to analyze gene expression data and to improve cluster quality are studied in ...by using Support vector machine algorithm ...including gene ... See full document
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Global gene expression analysis of developing neocortex using SAGE
... quantitative data in the format of transcript copy per cell, or percentage of the total transcript ...relative data is generated and the only meaningful comparison is between test and reference levels of ... See full document
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Application of Data Mining Tools for Exploring Data: Yarn Quality Case Study
... regression analysis. The overall data averaged by laydown was used for ...Three principal components were found that accounted for about 71% of the variation of the eight cotton ...three ... See full document
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Incorporating higher-order representative features improves prediction in network-based cancer prognosis analysis
... microarray gene expression measurements, we use the weighted coexpression networks and corresponding modules to describe the coordination among ...include principal components other than the ... See full document
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Permutation validated principal components analysis of microarray data
... of gene subsets with large variation between condition groups, the reliability of the results has to be ...based gene selection with a confidence measure using leave-one-out ... See full document
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Identification of gene gene interaction using principal components
... GWAS data with information from previous candi- date-gene or functional studies, and considering genetic interaction effects, we may be able to identify groups of genes that contribute to a complex ... See full document
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Deep phenotyping of human induced pluripotent stem cell–derived atrial and ventricular cardiomyocytes
... proteome analysis of atrial and ventricular ...in expression levels (1,037 upregulated and 865 downregulated) (Supplemental Table ...the principal component analysis (PCA) and the cluster ... See full document
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Analysis of principal components of pollution in Baiyangdian
... third principal component is of high correlation coefficient with chorophyll, which reflect the bios character of the lake’s ...the data analysis of site investigation, there is a strong association ... See full document
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Psychometric properties of the Chinese craving beliefs questionnaire for heroin abusers in methadone treatment
... the components and diagnostic value of craving con- tinues, reliable and valid measures of craving would have advantages for clinical psychologists, physicians, and ... See full document
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