[PDF] Top 20 Multilocus Variable Number Tandem Repeat Analysis Scheme for Chlamydia felis Genotyping: Comparison with Multilocus Sequence Typing
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Multilocus Variable Number Tandem Repeat Analysis Scheme for Chlamydia felis Genotyping: Comparison with Multilocus Sequence Typing
... C. felis strains. Here we present an MLVA-based molecu- lar typing system for the discrimination of ...C. felis isolates that does not require culture and can therefore be performed directly with DNA ... See full document
7
Comparison between Salmonella enterica Serotype Enteritidis Genotyping Methods and Phage Type
... among typing results collected by applying multilocus vari- able-number tandem-repeat analysis (MLVA), pulsed-field gel electrophoresis (PFGE), and automated ribotyping, with a ... See full document
11
Comparison of Multilocus Variable Number Tandem Repeat Analysis and Whole Genome Sequencing for Investigation of Clostridium difficile Transmission
... olecular typing significantly enhances Clostridium difficile outbreak investigation and transmission studies, as well as informing surveillance efforts (1, ...used typing techniques in Europe and North ... See full document
9
Evaluation of a Multilocus Variable Number Tandem Repeat Analysis Scheme for Typing Human Brucella Isolates in a Region of Brucellosis Endemicity
... have repeat unit sizes of 9 bp or greater, and microsatellites have repeat unit sizes of up to 8 bp ...in multilocus variable-number tandem-repeat anal- ysis (MLVA) have ... See full document
6
Multilocus Variable Number Tandem Repeat Analysis and Multilocus Sequence Typing Reveal Genetic Relationships among Clostridium difficile Isolates Genotyped by Restriction Endonuclease Analysis
... reliable genotyping methods for epidemiological investigations and global surveillance of ...study, multilocus sequence typing (MLST) and multilocus variable-number ... See full document
7
Clostridium botulinum Group I Strain Genotyping by 15 Locus Multilocus Variable Number Tandem Repeat Analysis
... several genotyping methods have been applied to ...17), multilocus sequence typing (MLST) (13), and whole-ge- nome DNA microarrays ...these genotyping methods is only partially ... See full document
12
Multilocus Variable Number Tandem Repeat Analysis for Investigation of Clostridium difficile Transmission in Hospitals
... of multilocus variable-number tandem-repeat (VNTR) analysis (MLVA) for molecular subtyping of ...endonuclease analysis (REA) ...molecular genotyping was performed ... See full document
9
Comparison of Multiple Locus Variable Number Tandem Repeat Analysis with Pulsed Field Gel Electrophoresis, spa Typing, and Multilocus Sequence Typing for Clonal Characterization of Staphylococcus aureus Isolates
... Using the PFGE cutoff of 92%, which reflected up to a three-band difference between two PFGE patterns, it was pos- sible to raise the MLVA cutoff level to 77% in order to obtain the most stringent criteria in MLVA ... See full document
6
Selection and Validation of a Multilocus Variable Number Tandem Repeat Analysis Panel for Typing Shigella spp
... molecular typing methods, such as ribotyping (5), plasmid profile analysis, re- striction fragment length polymorphism (25, 26), and pulsed- field gel electrophoresis (PFGE) (37), has greatly improved the ... See full document
11
Optimized Multilocus Variable Number Tandem Repeat Analysis Assay and Its Complementarity with Pulsed Field Gel Electrophoresis and Multilocus Sequence Typing for Listeria monocytogenes Clone Identification and Surveillance
... Previous MLVA schemes have been associated with a number of PCR failures for some VNTR loci, resulting in the incomplete characterization of some isolates (26, 28, 29, 33). Missing data lead to lower ... See full document
13
Staphylococcal Interspersed Repeat Unit Typing of Staphylococcus aureus: Evaluation of a New Multilocus Variable Number Tandem Repeat Analysis Typing Method
... contain variable repeated units among strains (43, ...a multilocus variable-number tandem-repeat (VNTR) analysis (MLVA) have been used extensively for typ- ing of clinical ... See full document
9
Multiple Locus Variable Number Tandem Repeat Analysis of Neisseria meningitidis Yields Groupings Similar to Those Obtained by Multilocus Sequence Typing
... molecular typing and is already used by many research groups worldwide for epidemiological stud- ies, and a large public MLST database is readily available over the ...for comparison of strains, the ... See full document
10
Multilocus Variable Number Tandem Repeat Analysis for Molecular Typing of Shigella sonnei
... short repeat sequences, which ranged from 5 to 9 ...one repeat unit in strain Ss046 or strain ...one repeat unit in strain 53G but 10 units in strain ...copy number of the repeat unit ... See full document
7
Comparison of Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Investigation of Clostridium difficile Transmission
... olecular typing significantly enhances Clostridium difficile outbreak investigation and transmission studies, as well as informing surveillance efforts (1, ...used typing techniques in Europe and North ... See full document
9
Multilocus Variable Number Tandem Repeat Typing of Mycobacterium ulcerans
... this comparison with the Mexican isolates, the South American isolates appeared distantly related to the ...the sequence of the 3 ⬘ -terminal end of its 16S rRNA gene, which is identical to that of ...the ... See full document
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Multilocus Variable Number Tandem Repeat Analysis of Clostridioides difficile Clusters in Ribotype 027 Isolates and Lack of Association with Clinical Outcomes
... Patients with confirmed CDI, hospitalized in one of 10 acute care hospitals in the provinces of Quebec and Ontario, Canada, were enrolled prospectively between June 2005 and October 2008 (16). The study was approved by ... See full document
11
Characterization of Genetic Diversity of Bacillus anthracis in France by Using High Resolution Melting Assays and Multilocus Variable Number Tandem Repeat Analysis
... (HRM) analysis, we developed a cost-effective method to genotype a set of 13 phylogenetically informative single-nucleotide polymorphisms (SNPs) within the genome of Bacillus ...Multiple-locus ... See full document
7
Epidemic spread of ST1-MRSA-IVa in a neonatal intensive care unit, Italy
... Two MRSA isolates were identified from blood and the first surveillance nasal sample of an infant, respectively, on April 5, 2011. These isolates displayed a different drug susceptibility pattern from that of the endemic ... See full document
7
Molecular Characterization of Salmonella enterica Serovar Typhimurium Isolated from Human, Food, and Animal Sources in Malaysia
... using multilocus variable number tandem repeat analysis (MLVA) and pulsed-field gel electrophoresis ...common variable number tandem repeat (VNTR) ... See full document
9
High Resolution Genotyping of Chlamydia trachomatis Strains by Multilocus Sequence Analysis
... acid sequence divergence for the purpose of escap- ing the host immune ...of sequence variation is much higher than that in noncoding regions of the ...of sequence variability but no gene order ... See full document
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