[PDF] Top 20 Multiple Locus Variable Number Tandem Repeat Analysis of Neisseria gonorrhoeae
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Multiple Locus Variable Number Tandem Repeat Analysis of Neisseria gonorrhoeae
... the number of different loci, while the difference in the number of repeats is not taken into ...computerized analysis and database implementa- ... See full document
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Evaluating the impacts of stressors of Pseudomonas syringae pathovar tomato on the effectiveness of multi-locus variable number tandem repeat analysis and multi-locus sequence typing in microbial forensic investigations
... Our MLST results correspond with the previous find- ings that the core genome of P. syringae is highly clonal and displays very little genetic heterogeneity [18]. Each passage consisted of taking 0.1 ml of culture into ... See full document
8
Strain Typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by Using Multiple Locus Variable Number Tandem Repeat Analysis
... system. Multiple-locus VNTR analysis (MLVA) has previously shown great discriminatory capacity and accurate estimation of ge- netic relationships within bacterial pathogens such as Fran- cisella ... See full document
7
Comparison of Two Multiple Locus Variable Number Tandem Repeat Analysis Methods for Molecular Strain Typing of Human Brucella melitensis Isolates from the Middle East
... 2008. Multiple locus variable number tandem repeat (VNTR) analysis (MLVA) of Brucella ...multilocus variable-number tandem-repeat ... See full document
6
Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA)
... We thank Fabienne Loisy-Hamon and Benoit Lebeau from the Ceeram company for their support to this project. This includes the cost of the MLVA typing of all S. aureus isolates. The contributions of SS and ATF are ... See full document
8
Genetic source tracking of an anthrax outbreak in Shaanxi province, China
... SNP analysis [4]. Other molecular typing methods, such as the multiple-locus variable-number tandem repeat ana- lysis (MLVA) [6–8], have also been used to illustrate the ... See full document
8
Multiple locus variable number tandem repeat analysis (MLVA) genotyping of human Brucella isolates in Malaysia
... Data indicated in the dendrogram: Strain name in the laboratory Strain, complete panels MLVA16 genotypes in this article MLVA type, genotypes corresponding to each isolate in the Brucell[r] ... See full document
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Multiple Locus Variable Number Tandem Repeat Analysis Genotyping of Human Brucella Isolates from Turkey
... Data analysis. Analysis of electrophoresis patterns was carried out with the BioCalculator software version ...to repeat unit numbers were imported into BioNumerics (Applied Maths, Belgium) as a ... See full document
8
Typing and Subtyping of Clostridium difficile Isolates by Using Multiple Locus Variable Number Tandem Repeat Analysis
... developed multiple-locus variable-number tandem-repeat analysis (MLVA) with automated fragment analysis and multicolored capillary electrophoresis as a typing ... See full document
5
Multiple Locus Variable Number Tandem Repeat Assay Analysis of Methicillin Resistant Staphylococcus aureus Strains
... Using a cutoff value of ⬎ 75% relatedness increased the number of isolates in each MLVA type, thus reducing the number of MLVA types from 38 to 28. Using the ⬎ 75% cutoff with BioNumerics software clustered ... See full document
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Comparison of Multiple Locus Variable Number Tandem Repeat Analysis with Pulsed Field Gel Electrophoresis Typing of Acinetobacter baumannii in China
... one locus (5 at Abaum_0845, 1 at Abaum_2396) ...VNTR locus TRs were capable of being altered in a relatively small number of generations, the stability of the 7 loci was examined by 30 in vitro ... See full document
6
Identification of Variable Number Tandem Repeat (VNTR) Sequences in Legionella pneumophila and Development of an Optimized Multiple Locus VNTR Analysis Typing Scheme
... of tandem repeats in ...The number of repeat units was assessed by measuring the size of PCR products encompassing the ...a number of primer sets would amplify only a subset of the isolates ... See full document
10
Multiple Locus Variable Number Tandem Repeat Analysis, a Novel Typing Scheme To Study the Genetic Relatedness and Epidemiology of Enterococcus faecium Isolates
... Stability of tandem repeats in outbreaks and in vitro. To analyze the stability of MLVA profiles, MLVA profiles of isolates recovered during two related outbreaks in the years 2000 to 2003 were determined. The ... See full document
9
Comparison of Fingerprinting Methods for Typing Methicillin Resistant Staphylococcus aureus Sequence Type 398
... the multiple-locus variable-number tandem-repeat assay (MLVA) and pulsed-field gel electrophoresis (PFGE) when using restriction enzymes BstZI, SacII, and ApaI to fingerprint a ... See full document
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Multiple Locus Variable Number Tandem Repeat Analysis for Longitudinal Survey of Sources of Pseudomonas aeruginosa Infection in Cystic Fibrosis Patients
... the number of markers can be reduced to 14 (12 minisatellites and 2 microsatellites) by excluding ms213 or even to 10 (minisat- ellites ms142, ms211, ms212, ms213, ms214, ms215, ms216, ms217, ms222, and ...their ... See full document
9
Improving resolution of public health surveillance for human Salmonella entericaserovar Typhimurium infection: 3 years of prospective multiple locus variable number tandem repeat analysis (MLVA)
... subset analysis of 15 groups of recurrent STM MLVA clusters (consisting of 1-2 recurrences each) revealed differences in size, duration and spatial density between initial clusters (15 clusters) and corresponding ... See full document
10
Multiple Locus Variable Number Tandem Repeat Analysis in Genotyping Yersinia enterocolitica Strains from Human and Porcine Origins
... actual number of repeats was nine when the size of the V2A amplicon was 274 ...the repeat number of nine equaled lengths of 282 and 310 bp for V2A fragments (7, ...VNTR locus (Table ... See full document
6
Multiple Locus Variable Number Tandem Repeat Analysis of Salmonella enterica Serovar Typhi
... the most variable VNTR loci for epidemiological typing. Forty- three potential VNTRs were identified using the web-based resource tool (6) (see Table S1 in the supplemental material). The primers were tested using ... See full document
8
Francisella tularensis Strain Typing Using Multiple Locus, Variable Number Tandem Repeat Analysis
... potential variable-number tandem repeats (VNTRs), we developed a multilocus VNTR analysis (MLVA) typing system for this ...Cluster analysis identified two genetically distinct groups ... See full document
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Multiple Locus Variable Number Tandem Repeat Analysis of Neisseria meningitidis Yields Groupings Similar to Those Obtained by Multilocus Sequence Typing
... MLVA. Variable-number tandem repeat (VNTR) PCRs were performed in 25- l volumes with Applied Biosystems 9700 PCR machines (Applied Biosys- tems, Foster City, ...the number of repeats ... See full document
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