[PDF] Top 20 Hash Based Core Genome Multilocus Sequence Typing for Clostridium difficile
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Hash Based Core Genome Multilocus Sequence Typing for Clostridium difficile
... to core genome multilocus sequence typing (cgMLST) in which alleles at each gene are reproducibly converted to a unique hash, or short string of letters ...mapping- based ... See full document
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Phylogenetic Analysis of Mycobacterium tuberculosis Strains in Wales by Use of Core Genome Multilocus Sequence Typing To Analyze Whole Genome Sequencing Data
... PGG based on sequence data, as shown in ...SCG based on the sequence data ...yield sequence data for all nine loci, and SCG-3a was not represented in the data ... See full document
11
Determination of Accessory Gene Patterns Predicts the Same Relatedness among Strains of Streptococcus pneumoniae as Sequencing of Housekeeping Genes Does and Represents a Novel Approach in Molecular Epidemiology
... the core genome (multilocus sequence typing [MLST]), but these do not provide informa- tion on gene content that may affect the potential of isolates to cause invasive pneumococcal ... See full document
6
Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole Genome Sequence Based Typing of Listeria monocytogenes
... MLST typing, a prerequisite for successful interlaboratory ex- change of ...gene typing (spa) and now contains ⬎ 300,000 typing entries originating from ⬎ 100 countries, might serve as a blueprint ... See full document
8
A Core Genome Multilocus Sequence Typing Scheme for Enterococcus faecalis
... with genome sequences from the NCBI and SRA databases highlight the robustness of the selected target genes and thus the suitability of the scheme to investigate the relatedness of ...isolates based on ... See full document
12
Multilocus Variable Number Tandem Repeat Analysis and Multilocus Sequence Typing Reveal Genetic Relationships among Clostridium difficile Isolates Genotyped by Restriction Endonuclease Analysis
... genotyping. Sequence analysis of the tcdC gene identi- fied 12 genotypes, 7 of which were previously described ...ST based on the tcdC genotype was 63% (Table ...gene sequence originally described by ... See full document
7
Core Genome Multilocus Sequence Typing Scheme for High Resolution Typing of Enterococcus faecium
... countries. Based on the results, we propose the following thresholds and epidemiological interpretation for allelic differ- ences that are observed when using the ...outbreak. Based on these criteria, we ... See full document
10
Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus
... The suggested analysis starts with running a default cgMLST analysis with all of the V. parahaemolyticus genomes available in the database, and the new V. parahaemo- lyticus genomes being tested can be localized in the ... See full document
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Core Genome Multilocus Sequence Typing: a Standardized Approach for Molecular Typing of Mycoplasma gallisepticum
... ferentiation based on sequence analysis of 5 loci remains insufficient for accurate outbreak ...massive sequence data and the diverse properties of different genes within bacterial genomes results in ... See full document
11
Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analysis in the Epidemiology of Brucella melitensis Infections
... For distantly related genomes from the same lineage, cgMLST as well as SNP analysis provided higher phylogenetic distance resolution than MLVA-16, and therefore spot- ting divergent genotypes unlikely to be connected to ... See full document
15
Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to Clostridium difficile Virulence
... ABSTRACT Clostridium difficile is a spore-forming anaerobic bacterium that causes colitis in patients with disrupted colonic ...(including multilocus sequence type 1/ri- botype 027) were associated ... See full document
15
Multilocus Sequence Typing Analysis of Human and Animal Clostridium difficile Isolates of Various Toxigenic Types
... C. difficile infection is more a host-related phenomenon rather than being related to the characteristics of the organism (35, ...C. difficile, classifying toxigenic strains as highly or less virulent in ... See full document
9
Multilocus Sequence Typing of Clostridium difficile
... Geno- typing methods in common use for C. difficile include PCR ribotyping, pulsed-field gel electrophoresis (PFGE), and re- striction-endonuclease analysis (REA) (4, 10, 26, ...are based on gel ... See full document
9
Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome Wide Typing of Clostridium difficile
... gene sequence identity and 100% gene sequence overlap) reflecting the high diversity within ...reference genome (GenBank accession number ...reference genome (with identity of ⱖ 90% and more ... See full document
10
Multilocus Sequence Typing of the Porcine and Human Gastric Pathogen Helicobacter suis
... ing H. suis strains were not attempted on these samples, we cannot exclude the presence of additional sequence types in 1 individual animal at a lower colonization rate than that of the dominant strain. For H. ... See full document
7
Rapid detection of toxigenic Clostridium difficile in fecal samples by magnetic immuno PCR assay
... Nucleotide sequence of Clostridium difficile toxin A gene fragment and detection of toxigenic strains by polymerase chain reaction.. Characterisation of Clostridium difficile strains by [r] ... See full document
5
Genomic Signature of Multidrug Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012
... ibility group Q1 (IncQ1) plasmid replicon, the class 1 integron, and the mer operon. The genomic analysis revealed 415 SNP dif- ferences overall and 35 deletions among 33 of the isolates subjected to whole-genome ... See full document
11
Multilocus sequence typing breathes life into a microbial metagenome
... nucleotide sequence-based genetic typing method, multilocus sequence typing, we were able for the first time to match clonal cultivable isolates to a published and controversial ... See full document
9
Multilocus Sequence Typing System for Group B Streptococcus
... the genome sequence of the GBS strain NEM316 (11) with homologous sequences from other ...and sequence diversity observed in pilot studies with a restricted set of GBS ... See full document
7
What's a SNP between friends: the influence of single nucleotide polymorphisms on virulence and phenotypes of Clostridium difficile strain 630 and derivatives
... Complete genome sequence of the Clostridium difficile laboratory strain 630Deltaerm reveals differences from strain 630, including translocation of the mobile element CTn5.. Rosenbusch K[r] ... See full document
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