[PDF] Top 20 Identification and Characterization of Variable Number Tandem Repeat Markers for Typing of Brucella spp
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Identification and Characterization of Variable Number Tandem Repeat Markers for Typing of Brucella spp
... to assist with epidemio- logical traceback include an isolate from a case of human brucellosis in the United Kingdom (isolate tree reference 60). In this case the isolate profile most closely matches isolates of B. ... See full document
12
Application of Multilocus Variable Number Tandem Repeat Analysis for Molecular Typing of the Agent of Leptospirosis
... Epidemiologic investigation of leptospirosis in New Cale- donia. We validated MLVA as a useful tool for typing Lepto- spira spp. by conducting a study in New Caledonia, a region of high endemicity. We ... See full document
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Comparison of Two Multiple Locus Variable Number Tandem Repeat Analysis Methods for Molecular Strain Typing of Human Brucella melitensis Isolates from the Middle East
... molecular typing methods are useful for identifying Brucella isolates and determining species and biovar designations; however, they have limited value for epidemiological trace-back investiga- tions (6, ... See full document
6
Characterization of Clonal Complexity in Tuberculosis by Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Typing
... and characterization of clonal variants of ...unit– variable-number tandem repeat typing (MIRU-VNTR), as a potential tool to simplify and optimize the clonal analysis of ...the ... See full document
5
Epidemiological and Phylogenetic Analysis of Spanish Human Brucella melitensis Strains by Multiple Locus Variable Number Tandem Repeat Typing, Hypervariable Octameric Oligonucleotide Fingerprinting, and rpoB Typing
... HOOF-print typing, the number of repeats or alleles was estimated from their molecular sizes and sequences (1, 5, 18, ...HOOF-print markers was used to define ...largest number of single- ... See full document
7
Identification of Variable Number Tandem Repeat Loci in Leptospira interrogans Sensu Stricto
... VNTR typing was able to differentiate 45 out of 51 serovars of ...seven markers were used in combination but also when only three markers (VNTR7, -10, and -19) were ...the identification of L. ... See full document
7
Evaluation of a Multilocus Variable Number Tandem Repeat Analysis Scheme for Typing Human Brucella Isolates in a Region of Brucellosis Endemicity
... Minisatellite repeat numbers (panel 1 [loci bruce06, bruce08, bruce11, bruce12, bruce42, bruce43, bruce45, and bruce55]) and mic- rosatellite repeat numbers (panel 2A [loci bruce18, bruce19, and bruce21] ... See full document
6
Francisella tularensis Strain Typing Using Multiple Locus, Variable Number Tandem Repeat Analysis
... potential variable-number tandem repeats (VNTRs), we developed a multilocus VNTR analysis (MLVA) typing system for this ...VNTR markers are useful for identifying ...rapid ... See full document
7
Selection and Validation of a Multilocus Variable Number Tandem Repeat Analysis Panel for Typing Shigella spp
... too variable to address correct relatedness within different lineages, especially since this analysis does not currently allow the assignment of differ- ent relative weights to ... See full document
11
Multilocus Variable Number Tandem Repeat Typing of Mycobacterium ulcerans
... the typing of other species of the mycobacterial genus as ...RFLP-based typing methods, such as easier DNA extraction (from boiled colonies) suitable for typing and easier interpretation of the ... See full document
6
Multiple Locus Variable Number Tandem Repeat Analysis Genotyping of Human Brucella Isolates from Turkey
... human Brucella isolates collected from different parts of Turkey during an 8-year pe- riod was evaluated by bacteriological, epidemiological, and molecular typing ... See full document
8
Multi-locus variable-number tandem repeat analysis of Chinese Brucella strains isolated from 1953 to 2013
... The MLVA11 assay profiled the 600 Brucella isolates into 104 genotypes with 58 singleton genotypes (Fig. 1). The number of strains for each genotype was shown in Fig. 2. The largest group (59 genotypes) ... See full document
8
Multiple locus variable number tandem repeat analysis (MLVA) genotyping of human Brucella isolates in Malaysia
... Data indicated in the dendrogram: Strain name in the laboratory Strain, complete panels MLVA16 genotypes in this article MLVA type, genotypes corresponding to each isolate in the Brucell[r] ... See full document
7
Typing and Subtyping of Clostridium difficile Isolates by Using Multiple Locus Variable Number Tandem Repeat Analysis
... Biosystems). Markers from a selected number of isolates were sequenced to verify accurate assignment of repeat ...calculated repeat numbers. The repeat numbers were analyzed using ... See full document
5
Polymorphism of Variable Number Tandem Repeats at Multiple Loci in Mycobacterium tuberculosis
... complete repeat unit in the variable ...complete repeat unit. The isolates without the com- plete repeat unit should not be able to regain the variability property, and therefore VNTR in these ... See full document
10
Development of Multiple Locus Variable Number Tandem Repeat Analysis for Molecular Typing of Mycoplasma pneumoniae
... the number of TRs, PCR primers targeting the regions flanking TR loci were ...of repeat copy number variations, the PCR products were purified with a Wizard PCR preps DNA purification system ... See full document
10
Use of Multilocus Variable Number Tandem Repeat Analysis for Typing Mycobacterium avium subsp paratuberculosis
... All isolates from humans were of the most common MLVA type (22222). In addition to IS900 RFLP typing, this provides evidence that the human M. avium subsp. paratuberculosis strains are identical to a subpopulation ... See full document
7
The use of mycobacterial interspersed repetitive unit typing and whole genome sequencing to inform tuberculosis prevention and control activities
... Whole genome sequencing was used in the Netherlands to investigate a well-characterised M. tuberculosis transmis- sion chain (confirmed by genotyping and contact tracing) involving five patients aged over 12 years, for ... See full document
5
Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement
... multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype ... See full document
5
A snapshot of genetic lineages of Mycobacterium tuberculosis in Ireland over a two year period, 2010 and 2011
... MIRU-VNTR typing was introduced at the Irish Mycobacteria Reference Laboratory (IMRL) which both cultures and receives isolates from microbiology laboratories around the ...MIRU-VNTR typing kit (GenoScreen, ... See full document
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