[PDF] Top 20 Overview of BioNLP 2011 Protein Coreference Shared Task
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Overview of BioNLP 2011 Protein Coreference Shared Task
... the protein links to the four proteins are not detected, because the response antecedent “five members” does not include the pro- tein mentions “SCL, TAL-2, LYL-1 and ... See full document
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Overview of the Epigenetics and Post translational Modifications (EPI) task of BioNLP Shared Task 2011
... EPI task corpus were drawn from PubMed ...tag protein/gene entities in the selected abstracts, removing ones where fewer than a specific cutoff are found 3) Per- form manual filtering removing documents not ... See full document
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Overview of BioNLP’09 Shared Task on Event Extraction
... the BioNLP’09 Shared Task (the BioNLP task, here- after) also addresses bio-IE, but takes a definitive step further toward finer-grained ...i.e. protein-protein ... See full document
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Proceedings of BioNLP Shared Task 2011 Workshop
... The BioNLP Shared Task 2011 is the second in the series, following up on the first event organized in ...the task was organized as a collaboration between several groups in Asia, Europe ... See full document
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BioNLP Shared Task 2011 Bacteria Biotope
... (BB) task is one of the five main tasks of the BioNLP Shared Tasks ...BB task consists of extracting bacteria location events from Web pages, in other words, citations of places where a given ... See full document
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Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016
... Annotators used the AlvisAE annotation edi- tor (Papazian et al., 2012). In order to speed up the annotation process, we used Alvis Suite (Ba and Bossy, 2016) to automatically pre-annotate the corpus. It included the ... See full document
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Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016
... complexity of the event scheme over the years is driven by the significant scientific advances in IE and the increasing need for computational models in bioinformatics and systems biology. In 2005, the objective of the ... See full document
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MSR NLP Entry in BioNLP Shared Task 2011
... We also found it helpful to have features about the path to the nearest protein, regardless of distance. In cases of multiple shortest paths, we took only one, exploring the dependency tree generally in left to ... See full document
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Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013
... the BioNLP ST’09 (52% F-score) and in four out of eight tasks in BioNLP ST’11 (53% F-score for the comparable GE task) (Bj¨orne and Salakoski, ...GE task considered in BioNLP ST’09 and ... See full document
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Fast and Robust Joint Models for Biomedical Event Extraction
... as protein-protein interac- ...the BioNLP 2009 and 2011 shared tasks which challenged participants to gather such events from biomedical text (Kim et ... See full document
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Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
... al., 2011) ...GE task data, but the application of EventMine ex- tends on this considerably by applying a stacked model (Miwa et ...the BioNLP ST 2011 EPI and ID tasks (Pyysalo et ...the ... See full document
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BioNLP Shared Task 2013 – An overview of the Genic Regulation Network Task
... GRN task adds a supplementary level that is closer to the biological needs: the participant systems have to extract a regulation network from the text that links and integrates basic molecular ...GRN task ... See full document
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Adapting a General Semantic Interpretation Approach to Biological Event Extraction
... to BioNLP’09 Shared Task on Event Extraction, organizers of the second BioNLP Shared Task on Event Extraction (BioNLP- ST’11) (Kim et ...of BioNLP-ST’11 is gen- ... See full document
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BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming
... popular task in Information Ex- traction (IE) challenges applied to molecular biol- ogy, such as in LLL (N´edellec, 2005), BioCreative Protein-Protein Interaction Task (Krallinger et ...or ... See full document
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Overview of BioNLP Shared Task 2013
... CG task concerns the extraction of events relevant to cancer, covering molecular foundations, cellular, tissue, and organ-level effects, and organism-level ...the task is novel in particular in extending ... See full document
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Overview of BioNLP Shared Task 2011
... EPI task (Ohta et al., 2011) focuses on IE for protein and DNA modifications, with particular em- phasis on events of epigenetics ...basic task setup and entity definitions follow those of the ... See full document
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Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011
... ID task are the event types summarized in Table ...the BioNLP ST’09 and its repeat, the 2011 GE task (Kim et ...ID task extend on those of GE in the inclusion of additional entity types ... See full document
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Overview of Genia Event Task in BioNLP Shared Task 2011
... The task introduced in BioNLP-ST 2009 was re- named to Genia event (GE) task, and was hosted again in BioNLP-ST 2011, which also hosted four other IE tasks and three supporting tasks ... See full document
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Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011
... general task setting encompasses a rich set of potential relation extraction ...the task, we aimed to select relations that minimize overlap between the targets of other tasks while maintain- ing relevance ... See full document
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The Taming of Reconcile as a Biomedical Coreference Resolver
... the BioNLP Shared Task 2011 organizers for their efforts, and gratefully acknowledge the support of the National Science Foundation under grants IIS-1018314 and DBI- 0849977 and the Defense ... See full document
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