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[PDF] Top 20 False Discovery Rate Control with Groups

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False Discovery Rate Control with Groups

False Discovery Rate Control with Groups

... distinct groups, and showed the legitimacy of such separate analysis for FDR ...FDR control is hardly used, it is still potentially interesting to explore possible applications of FDR with group structures ... See full document

40

Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes

Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes

... Several other approaches that take the discreteness into account for FDR control have been suggested in the literature. Kulinskaya and Lewin (20) suggested an FDR-controlling procedure using randomized P values to ... See full document

15

A New Approach to the Problem of Multiple Comparisons in the Genetic Dissection of Complex Traits

A New Approach to the Problem of Multiple Comparisons in the Genetic Dissection of Complex Traits

... “false discovery rate,” that is, the expected proportion of true null hypotheses within the class of rejected null ...the false discovery rate, power to detect true effects is ... See full document

8

Asymptotic Results on Adaptive False Discovery Rate Controlling Procedures Based on Kernel Estimators

Asymptotic Results on Adaptive False Discovery Rate Controlling Procedures Based on Kernel Estimators

... In this paper, we study the asymptotic behavior of a class of plug-in procedures based on kernel estimators of the density of the p-values, as the number m of tested hypotheses grows to infinity. In a setting where the ... See full document

37

A direct approach to false discovery rates

A direct approach to false discovery rates

... typically control the type I error rate for a single-hypothesis test, a compound error rate is controlled for multiple-hypothesis ...the false discovery rate FDR traditionally ... See full document

20

False Discovery Rate in Linkage and Association Genome Screens for Complex Disorders

False Discovery Rate in Linkage and Association Genome Screens for Complex Disorders

... The genome is considered to be 3300 cM long and organized in 22 chromosomes of equal length. One-third of the 200 diseased individuals were carriers of one of the three disease loci. We assumed that 1100 markers, each 3 ... See full document

6

ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates

ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates

... Background: False discovery rate (FDR) control is commonly accepted as the most appropriate error control in multiple hypothesis testing ... See full document

14

Enhancing eQTL analysis techniques with special attention to the transcript dependency structure

Enhancing eQTL analysis techniques with special attention to the transcript dependency structure

... to control the false discovery rate in the presence of true ...the control of the false discovery ...the false discovery rate using the known ... See full document

114

Penalized Multimarker vs. Single-Marker Regression Methods for Genome-Wide Association Studies of Quantitative Traits

Penalized Multimarker vs. Single-Marker Regression Methods for Genome-Wide Association Studies of Quantitative Traits

... by false discovery rate (FDR) control, and assess their performance in comparison with ...FDR control provides substantially more power than SMA with genome- wide type-I error ... See full document

43

Altered homotopic connectivity in postherpetic neuralgia: a resting state fMRI study

Altered homotopic connectivity in postherpetic neuralgia: a resting state fMRI study

... We examined the iFC associated with brain areas that exhibited significantly different VMHC between groups. Specifically, we computed whole-brain voxel-wise Pearson’s correlations that were associated with mean ... See full document

10

A maple syrup extract alters lipid metabolism in obese type 2 diabetic model mice

A maple syrup extract alters lipid metabolism in obese type 2 diabetic model mice

... The intensity values of probe sets were normalized by the distribution-free weighted method in the case of liver and by the quantile normalization factor ana- lysis for robust microarray summarization method in the case ... See full document

8

Application of the False Discovery Rate to Quantitative Trait Loci Interval Mapping With Multiple Traits

Application of the False Discovery Rate to Quantitative Trait Loci Interval Mapping With Multiple Traits

... using tests with the highest test statistic for each marker interval (FDRm). For the latter, a method was developed to predict comparison-wise error rates. At low error rates, FDR1 behaved erratically; FDRm was more ... See full document

10

Coordinate based meta analysis of functional neuroimaging data: false discovery control and diagnostics

Coordinate based meta analysis of functional neuroimaging data: false discovery control and diagnostics

... then control the FDR whilst directly taking account of the dependences between the multiple ...error control scheme: false cluster discovery rate (FCDR) ...to control the FCDR, ... See full document

12

A Tight Prediction Interval for False Discovery Proportion under Dependence

A Tight Prediction Interval for False Discovery Proportion under Dependence

... to control the expected value of FDP, namely the false discovery rate (FDR) ...to control the FDR at ...to control FDR under common designs, it is ... See full document

9

Quantitative Trait Loci Analysis Using the False Discovery Rate

Quantitative Trait Loci Analysis Using the False Discovery Rate

... FDR control in independently repeated experi- ments and make use of the results to offer a set of FDR guidelines for the significance of findings in QTL ... See full document

8

Adaptive False Discovery Rate Control under Independence and Dependence

Adaptive False Discovery Rate Control under Independence and Dependence

... a control of the false discovery rate ...as false) by the ...to control the FDR under the assumption of independence between the ...FDR control still holds if the ... See full document

35

Adaptive linear step-up procedures that control the false discovery rate

Adaptive linear step-up procedures that control the false discovery rate

... using false discovery ...considered control of the false discovery rate in this important biological area (Weller et ...genome-wise control of the familywise error ... See full document

17

Multiple influential point detection in high dimensional regression spaces

Multiple influential point detection in high dimensional regression spaces

... to control the false discovery rate (FDR) of influential points by using, for example, the Benjamini–Hochberg procedure (Benjamini and Hochberg, ... See full document

24

Dissociation of understanding from applying others’ false beliefs in remitted schizophrenia: evidence from a computerized referential communication task

Dissociation of understanding from applying others’ false beliefs in remitted schizophrenia: evidence from a computerized referential communication task

... Our results show that patients with non-remitted schizophrenia and individuals with remitted schizophre- nia performed significantly worse than controls on a task of applying knowledge of others’ false beliefs. ... See full document

9

Synovial fluid biomarkers associated with osteoarthritis severity reflect macrophage and neutrophil related inflammation

Synovial fluid biomarkers associated with osteoarthritis severity reflect macrophage and neutrophil related inflammation

... Limitations of this study include the small cohort size, especially in comparison to the number of outcomes mea- sured. However, to mitigate this limitation, multiple mea- sures correction was performed by adjusting p ... See full document

9

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