[PDF] Top 20 Normalizing DNA Microarray Data
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Normalizing DNA Microarray Data
... of DNA array studies have demonstrated that large-scale gene expression profiles are valuable in both cancer diagnosis and prognosis and may be used for cancer classification (Alizadeh et ...These ... See full document
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DNA Microarray Data Analysis and Mining: Affymetrix Software Package and In-House Complementary Packages
... Affymetrix microarray for example, there are two sub-steps in this process: reverse transcription of RNA to cDNA without labeling, then followed by in vitro transcription of cDNA to cRNA labeled with biotin ... See full document
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Analyzing Gene Expressions in Saccharomyces Cerevisiae using Hierarchical Clustering of DNA Microarray Data
... In conclusion, It is demonstrated that the use of genes information improve the quality of DNA microarray. The major advantages is that they are computationally fast and are therefore capable of handling ... See full document
6
DNA microarray integromics analysis platform
... specialized data analysis methods. This article describes the DNA Microarray Integromics Analysis Platform, a unique web application that focuses on computational integration and analysis of “ ... See full document
23
Rapid Virological Diagnosis of Central Nervous System Infections by Use of a Multiplex Reverse Transcription PCR DNA Microarray
... RT-PCR DNA microarray de- tected 11 (37%) HHV-7 and HEV mixed infections among the 30 pediatric aseptic meningitis cases initially related to ...HHV-7 DNA was from actively replicating virus and not ... See full document
6
Genetic lineages of undifferentiated-type gastric carcinomas analysed by unsupervised clustering of genomic DNA microarray data
... aCGH data from 63 DNA samples from 29 UGCs, we confirmed that most of the samples examined from the same tumour were clustered more closely together than in any other sample, thus ful- filling the criteria ... See full document
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Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution
... of microarray data variability are cer- tainly of the same nature as the collective phenomena in physical systems but the ensemble of the processes involved is so complex that one would expect some com- ... See full document
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A NOVEL EARLY WARNING SYSTEM USING FUZZY MULTIPLE ATTRIBUTE DECISION MAKING ALGORITHM AND METEOROLOGICAL DATA
... as microarray DNA has high dimensional data it would lead to a challenging ...selection, data integration is also believed as an optimal solution in increasing cancer classification ... See full document
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spa Typing Method for Discriminating among Staphylococcus aureus Isolates: Implications for Use of a Single Marker To Detect Genetic Micro and Macrovariation
... that DNA sequence analysis of the protein A gene variable repeat region (spa typing) provides a rapid and accurate method to discriminate Staphylococcus aureus outbreak isolates from those deemed epidemiologically ... See full document
8
Improved filtering of DNA methylation microarray data by detection p values and its impact on downstream analyses
... can obfuscate even strong associations with the discov- ery of weak associations presumably being even more impeded, supporting the need for more stringent data preprocessing. It should be noted that this ... See full document
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Identification of candidate genes for congenital splay leg in piglets by alternative analysis of DNA microarray data
... RT Real time - PCR was performed with 6 genes identified as potential candidate genes for congenital splay leg from the alternative analysis of the genome wide expression data. The fragments used for primer design ... See full document
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DNA Microarray Analysis of Chimpanzee Liver during Acute Resolving Hepatitis C Virus Infection
... Other up-regulated immune transcription factors in this study included stimulated trans-acting factor of 50 kDa (STAF50) and IFN-inducible protein 16 (IFI-16). STAF50 is the human counterpart to the mouse Rpt-1 ... See full document
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Predictive Analysis of Microarray Data
... the microarray surface provides an image in which the intensity of each probe spot is related to the corresponding amount of messenger RNAs present in the ... See full document
6
LEAF: Leave-one-out Forward Selection Method for Gene Selection in DNA Microarray Data
... Recent progress in bioinformatics technology has facili- tated large-scale screening for candidate biomarkers [6]. A biomarker, as the name implies, is a cell-derived substance such as a gene, protein or enzyme that can ... See full document
6
DNA methylation epigenotypes in breast cancer molecular subtypes
... methylation microarray data revealed extensive DNA-methylation changes between tumor and adjacent tissue (Figure 1, Table S2 in Additional file 2) and concurrence of some of these ... See full document
12
Splicing Factor RBM20 Regulates Transcriptional Network of Titin Associated and Calcium Handling Genes in The Heart
... the DNA microarray ...These data suggest that calcium releasing signaling could be impaired, leading to calcium leaking, while calcium ATPase pump system was physiologically functional and could ... See full document
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Metasample Based Robust Sparse Representation for Tumor Classification
... In this paper, using Sparse Coding and Robust theory, we proposed a Metasample-Based Robust Sparse Represen- tation Classifier (MRSRC). Comparing MRSRC with SRC and SVM on various types of DNA microarray ... See full document
6
DNA Microarray Data Analysis: A Novel Biclustering Algorithm Approach
... in DNA microarray data analysis, collaborative filtering, market research, information retrieval, text mining, electoral trends, exchange analysis, and so ...with DNA microarray ... See full document
12
Normalization and analysis of DNA microarray data by self consistency and local regression
... the data are heteroscedastic: the error variance shows a clear dependence on the estimated ...the data Y and because of our use of the estimator a, rather than a strictly independent variable, as the ... See full document
12
Independent component analysis of Alzheimer's DNA microarray gene expression data
... Gene microarray technology is an effective tool to investigate the simultaneous activity of multiple cellular pathways from hundreds to thousands of ...because data in the colossal amounts generated by ... See full document
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